Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3832 and Ac3H11_3833 are separated by 149 nucleotides Ac3H11_3833 and Ac3H11_3834 overlap by 13 nucleotides Ac3H11_3834 and Ac3H11_3835 are separated by 59 nucleotides
Ac3H11_3832 - integral membrane sensor hybrid histidine kinase, at 48,038 to 49,825
_3832
Ac3H11_3833 - probable membrane protein YPO2051, at 49,975 to 50,367
_3833
Ac3H11_3834 - hydrolase, alpha/beta fold family, at 50,355 to 51,245
_3834
Ac3H11_3835 - Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase, at 51,305 to 51,664
_3835
Position (kb)
49
50
51 Strain fitness (log2 ratio)
-2
-1
0
1 at 49.226 kb on + strand, within Ac3H11_3832 at 49.226 kb on + strand, within Ac3H11_3832 at 49.226 kb on + strand, within Ac3H11_3832 at 49.227 kb on - strand, within Ac3H11_3832 at 49.909 kb on + strand at 49.909 kb on + strand at 49.909 kb on + strand at 50.251 kb on + strand, within Ac3H11_3833 at 50.251 kb on + strand, within Ac3H11_3833 at 50.252 kb on - strand, within Ac3H11_3833 at 50.482 kb on - strand, within Ac3H11_3834 at 50.598 kb on + strand, within Ac3H11_3834 at 50.791 kb on - strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.994 kb on + strand, within Ac3H11_3834 at 50.994 kb on + strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 51.115 kb on - strand, within Ac3H11_3834 at 51.115 kb on - strand, within Ac3H11_3834 at 51.272 kb on + strand at 51.273 kb on - strand at 51.326 kb on + strand at 51.327 kb on - strand at 51.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 49,226 + Ac3H11_3832 0.66 +1.3 49,226 + Ac3H11_3832 0.66 -2.5 49,226 + Ac3H11_3832 0.66 -0.3 49,227 - Ac3H11_3832 0.66 -1.7 49,909 + -0.4 49,909 + -0.8 49,909 + +0.6 50,251 + Ac3H11_3833 0.70 +1.6 50,251 + Ac3H11_3833 0.70 -1.5 50,252 - Ac3H11_3833 0.70 +1.3 50,482 - Ac3H11_3834 0.14 -0.3 50,598 + Ac3H11_3834 0.27 +0.7 50,791 - Ac3H11_3834 0.49 +0.5 50,935 + Ac3H11_3834 0.65 +0.7 50,935 + Ac3H11_3834 0.65 -0.0 50,935 + Ac3H11_3834 0.65 +0.7 50,935 + Ac3H11_3834 0.65 +0.2 50,994 + Ac3H11_3834 0.72 +1.0 50,994 + Ac3H11_3834 0.72 +1.3 50,995 - Ac3H11_3834 0.72 -0.7 50,995 - Ac3H11_3834 0.72 +0.4 50,995 - Ac3H11_3834 0.72 -2.5 51,115 - Ac3H11_3834 0.85 -0.3 51,115 - Ac3H11_3834 0.85 +0.2 51,272 + +1.0 51,273 - +0.7 51,326 + +0.0 51,327 - -0.2 51,327 - -0.4
Or see this region's nucleotide sequence