Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3833

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3832 and Ac3H11_3833 are separated by 149 nucleotidesAc3H11_3833 and Ac3H11_3834 overlap by 13 nucleotidesAc3H11_3834 and Ac3H11_3835 are separated by 59 nucleotides Ac3H11_3832 - integral membrane sensor hybrid histidine kinase, at 48,038 to 49,825 _3832 Ac3H11_3833 - probable membrane protein YPO2051, at 49,975 to 50,367 _3833 Ac3H11_3834 - hydrolase, alpha/beta fold family, at 50,355 to 51,245 _3834 Ac3H11_3835 - Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase, at 51,305 to 51,664 _3835 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 49.226 kb on + strand, within Ac3H11_3832at 49.226 kb on + strand, within Ac3H11_3832at 49.226 kb on + strand, within Ac3H11_3832at 49.227 kb on - strand, within Ac3H11_3832at 49.909 kb on + strandat 49.909 kb on + strandat 49.909 kb on + strandat 50.251 kb on + strand, within Ac3H11_3833at 50.251 kb on + strand, within Ac3H11_3833at 50.252 kb on - strand, within Ac3H11_3833at 50.482 kb on - strand, within Ac3H11_3834at 50.598 kb on + strand, within Ac3H11_3834at 50.791 kb on - strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.994 kb on + strand, within Ac3H11_3834at 50.994 kb on + strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 51.115 kb on - strand, within Ac3H11_3834at 51.115 kb on - strand, within Ac3H11_3834at 51.272 kb on + strandat 51.273 kb on - strandat 51.326 kb on + strandat 51.327 kb on - strandat 51.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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49,226 + Ac3H11_3832 0.66 +1.3
49,226 + Ac3H11_3832 0.66 -2.5
49,226 + Ac3H11_3832 0.66 -0.3
49,227 - Ac3H11_3832 0.66 -1.7
49,909 + -0.4
49,909 + -0.8
49,909 + +0.6
50,251 + Ac3H11_3833 0.70 +1.6
50,251 + Ac3H11_3833 0.70 -1.5
50,252 - Ac3H11_3833 0.70 +1.3
50,482 - Ac3H11_3834 0.14 -0.3
50,598 + Ac3H11_3834 0.27 +0.7
50,791 - Ac3H11_3834 0.49 +0.5
50,935 + Ac3H11_3834 0.65 +0.7
50,935 + Ac3H11_3834 0.65 -0.0
50,935 + Ac3H11_3834 0.65 +0.7
50,935 + Ac3H11_3834 0.65 +0.2
50,994 + Ac3H11_3834 0.72 +1.0
50,994 + Ac3H11_3834 0.72 +1.3
50,995 - Ac3H11_3834 0.72 -0.7
50,995 - Ac3H11_3834 0.72 +0.4
50,995 - Ac3H11_3834 0.72 -2.5
51,115 - Ac3H11_3834 0.85 -0.3
51,115 - Ac3H11_3834 0.85 +0.2
51,272 + +1.0
51,273 - +0.7
51,326 + +0.0
51,327 - -0.2
51,327 - -0.4

Or see this region's nucleotide sequence