Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3684 and Ac3H11_3743 are separated by 212 nucleotides Ac3H11_3743 and Ac3H11_3685 are separated by 19 nucleotides Ac3H11_3685 and Ac3H11_3686 overlap by 4 nucleotides
Ac3H11_3684 - hypothetical protein, at 41,751 to 43,076
_3684
Ac3H11_3743 - tRNA-Ser-TGA, at 43,289 to 43,373
_3743
Ac3H11_3685 - Urease accessory protein UreG, at 43,393 to 44,076
_3685
Ac3H11_3686 - Urease accessory protein UreF, at 44,073 to 44,783
_3686
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.810 kb on + strand at 40.810 kb on + strand at 40.811 kb on - strand at 40.880 kb on - strand at 40.949 kb on - strand at 41.048 kb on + strand at 41.049 kb on - strand at 41.049 kb on - strand at 41.087 kb on + strand at 41.088 kb on - strand at 41.119 kb on + strand at 41.120 kb on - strand at 41.120 kb on - strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.144 kb on + strand at 41.145 kb on - strand at 41.145 kb on - strand at 41.145 kb on - strand at 41.145 kb on - strand at 41.145 kb on - strand at 41.145 kb on - strand at 41.145 kb on - strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.146 kb on + strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.147 kb on - strand at 41.191 kb on + strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.195 kb on + strand at 41.196 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.269 kb on + strand at 41.270 kb on - strand at 41.270 kb on - strand at 41.305 kb on + strand at 41.306 kb on - strand at 41.306 kb on - strand at 41.306 kb on - strand at 41.306 kb on - strand at 41.306 kb on - strand at 41.381 kb on + strand at 41.382 kb on - strand at 41.393 kb on + strand at 41.393 kb on + strand at 41.394 kb on - strand at 41.394 kb on - strand at 41.394 kb on - strand at 41.432 kb on + strand at 41.432 kb on + strand at 41.433 kb on - strand at 41.589 kb on + strand at 41.589 kb on + strand at 41.664 kb on - strand at 41.740 kb on + strand at 41.740 kb on + strand at 41.752 kb on + strand at 41.752 kb on + strand at 41.752 kb on + strand at 41.772 kb on + strand at 41.772 kb on + strand at 41.846 kb on + strand at 41.846 kb on + strand at 41.847 kb on - strand at 41.857 kb on + strand at 41.857 kb on + strand at 41.857 kb on + strand at 41.857 kb on + strand at 41.858 kb on - strand at 41.858 kb on - strand at 41.876 kb on + strand at 41.876 kb on + strand at 41.890 kb on + strand, within Ac3H11_3684 at 41.890 kb on + strand, within Ac3H11_3684 at 42.050 kb on - strand, within Ac3H11_3684 at 42.050 kb on - strand, within Ac3H11_3684 at 42.057 kb on + strand, within Ac3H11_3684 at 42.057 kb on + strand, within Ac3H11_3684 at 42.058 kb on - strand, within Ac3H11_3684 at 42.058 kb on - strand, within Ac3H11_3684 at 42.058 kb on - strand, within Ac3H11_3684 at 42.058 kb on - strand, within Ac3H11_3684 at 42.058 kb on - strand, within Ac3H11_3684 at 42.058 kb on - strand, within Ac3H11_3684 at 42.084 kb on - strand, within Ac3H11_3684 at 42.123 kb on + strand, within Ac3H11_3684 at 42.195 kb on + strand, within Ac3H11_3684 at 42.271 kb on + strand, within Ac3H11_3684 at 42.271 kb on + strand, within Ac3H11_3684 at 42.271 kb on + strand, within Ac3H11_3684 at 42.272 kb on - strand, within Ac3H11_3684 at 42.272 kb on - strand, within Ac3H11_3684 at 42.272 kb on - strand, within Ac3H11_3684 at 42.373 kb on + strand, within Ac3H11_3684 at 42.374 kb on - strand, within Ac3H11_3684 at 42.374 kb on - strand, within Ac3H11_3684 at 42.423 kb on + strand, within Ac3H11_3684 at 42.423 kb on + strand, within Ac3H11_3684 at 42.424 kb on - strand, within Ac3H11_3684 at 42.424 kb on - strand, within Ac3H11_3684 at 42.494 kb on + strand, within Ac3H11_3684 at 42.494 kb on + strand, within Ac3H11_3684 at 42.494 kb on + strand, within Ac3H11_3684 at 42.512 kb on + strand, within Ac3H11_3684 at 42.513 kb on - strand, within Ac3H11_3684 at 42.518 kb on + strand, within Ac3H11_3684 at 42.530 kb on + strand, within Ac3H11_3684 at 42.530 kb on + strand, within Ac3H11_3684 at 42.531 kb on - strand, within Ac3H11_3684 at 42.579 kb on + strand, within Ac3H11_3684 at 42.580 kb on - strand, within Ac3H11_3684 at 42.580 kb on - strand, within Ac3H11_3684 at 42.617 kb on + strand, within Ac3H11_3684 at 42.617 kb on + strand, within Ac3H11_3684 at 42.618 kb on - strand, within Ac3H11_3684 at 42.618 kb on - strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.628 kb on + strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.629 kb on - strand, within Ac3H11_3684 at 42.633 kb on - strand, within Ac3H11_3684 at 42.647 kb on + strand, within Ac3H11_3684 at 42.647 kb on + strand, within Ac3H11_3684 at 42.647 kb on + strand, within Ac3H11_3684 at 42.647 kb on + strand, within Ac3H11_3684 at 42.647 kb on + strand, within Ac3H11_3684 at 42.672 kb on + strand, within Ac3H11_3684 at 42.673 kb on - strand, within Ac3H11_3684 at 42.691 kb on + strand, within Ac3H11_3684 at 42.691 kb on + strand, within Ac3H11_3684 at 42.691 kb on + strand, within Ac3H11_3684 at 42.691 kb on + strand, within Ac3H11_3684 at 42.692 kb on - strand, within Ac3H11_3684 at 42.692 kb on - strand, within Ac3H11_3684 at 42.759 kb on + strand, within Ac3H11_3684 at 42.759 kb on + strand, within Ac3H11_3684 at 42.921 kb on + strand, within Ac3H11_3684 at 42.922 kb on - strand, within Ac3H11_3684 at 42.922 kb on - strand, within Ac3H11_3684 at 43.038 kb on + strand at 43.038 kb on + strand at 43.039 kb on - strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.096 kb on + strand at 43.097 kb on - strand at 43.097 kb on - strand at 43.150 kb on + strand at 43.151 kb on - strand at 43.186 kb on - strand at 43.189 kb on + strand at 43.189 kb on + strand at 43.189 kb on + strand at 43.190 kb on - strand at 43.190 kb on - strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.224 kb on + strand at 43.224 kb on + strand at 43.224 kb on + strand at 43.228 kb on + strand at 43.229 kb on - strand at 43.229 kb on - strand at 43.229 kb on - strand at 43.229 kb on - strand at 43.229 kb on - strand at 43.241 kb on - strand at 43.241 kb on - strand at 43.394 kb on + strand at 43.394 kb on + strand at 43.522 kb on - strand, within Ac3H11_3685 at 43.673 kb on + strand, within Ac3H11_3685 at 43.673 kb on + strand, within Ac3H11_3685 at 43.673 kb on + strand, within Ac3H11_3685 at 43.673 kb on + strand, within Ac3H11_3685 at 43.673 kb on + strand, within Ac3H11_3685 at 43.673 kb on + strand, within Ac3H11_3685 at 43.673 kb on + strand, within Ac3H11_3685 at 43.674 kb on - strand, within Ac3H11_3685 at 43.674 kb on - strand, within Ac3H11_3685 at 43.674 kb on - strand, within Ac3H11_3685 at 43.674 kb on - strand, within Ac3H11_3685 at 43.674 kb on - strand, within Ac3H11_3685 at 43.674 kb on - strand, within Ac3H11_3685 at 43.674 kb on - strand, within Ac3H11_3685 at 43.910 kb on + strand, within Ac3H11_3685 at 43.910 kb on + strand, within Ac3H11_3685 at 43.910 kb on + strand, within Ac3H11_3685 at 43.911 kb on - strand, within Ac3H11_3685 at 43.940 kb on + strand, within Ac3H11_3685
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 40,810 + +1.3 40,810 + -1.0 40,811 - +0.6 40,880 - +0.0 40,949 - -1.1 41,048 + +0.3 41,049 - +0.1 41,049 - -0.2 41,087 + +0.3 41,088 - -0.6 41,119 + +1.1 41,120 - -0.2 41,120 - -0.2 41,144 + +0.6 41,144 + +1.0 41,144 + -0.9 41,144 + +0.7 41,144 + +0.3 41,144 + -0.5 41,144 + -1.4 41,144 + -0.2 41,144 + -0.1 41,144 + +0.8 41,145 - +0.4 41,145 - -0.4 41,145 - -0.1 41,145 - -1.2 41,145 - -0.9 41,145 - +0.5 41,145 - -0.6 41,146 + -0.4 41,146 + +0.8 41,146 + -0.2 41,146 + +0.8 41,146 + +0.6 41,146 + -0.5 41,146 + +0.4 41,146 + +1.3 41,146 + +0.3 41,146 + -1.9 41,146 + -1.1 41,146 + -0.2 41,146 + +0.7 41,147 - +0.4 41,147 - +1.1 41,147 - -1.2 41,147 - -0.3 41,147 - -0.8 41,147 - +1.0 41,147 - -0.6 41,147 - +0.7 41,147 - -0.8 41,147 - +0.3 41,147 - +0.8 41,191 + -0.9 41,192 - +1.1 41,192 - +0.3 41,192 - +0.2 41,192 - -1.0 41,195 + +1.1 41,196 - -1.2 41,235 - +0.7 41,235 - +1.4 41,269 + -1.4 41,270 - -1.6 41,270 - -0.5 41,305 + +0.8 41,306 - -0.1 41,306 - +0.7 41,306 - -1.8 41,306 - +0.2 41,306 - -1.2 41,381 + +0.9 41,382 - +0.2 41,393 + -0.1 41,393 + -0.3 41,394 - +0.7 41,394 - -1.7 41,394 - -1.3 41,432 + +0.2 41,432 + -0.2 41,433 - -2.4 41,589 + -2.0 41,589 + -1.6 41,664 - +0.8 41,740 + -0.3 41,740 + -0.0 41,752 + +0.8 41,752 + +0.3 41,752 + -1.6 41,772 + -0.6 41,772 + +1.1 41,846 + +0.8 41,846 + +0.6 41,847 - +0.2 41,857 + -1.4 41,857 + +0.2 41,857 + -1.4 41,857 + +1.4 41,858 - +0.8 41,858 - -0.1 41,876 + +1.0 41,876 + -1.7 41,890 + Ac3H11_3684 0.10 +0.5 41,890 + Ac3H11_3684 0.10 +0.2 42,050 - Ac3H11_3684 0.23 +0.1 42,050 - Ac3H11_3684 0.23 -0.3 42,057 + Ac3H11_3684 0.23 +0.1 42,057 + Ac3H11_3684 0.23 +2.5 42,058 - Ac3H11_3684 0.23 +0.9 42,058 - Ac3H11_3684 0.23 -0.5 42,058 - Ac3H11_3684 0.23 +0.9 42,058 - Ac3H11_3684 0.23 -0.4 42,058 - Ac3H11_3684 0.23 -1.4 42,058 - Ac3H11_3684 0.23 -1.4 42,084 - Ac3H11_3684 0.25 -0.5 42,123 + Ac3H11_3684 0.28 -0.7 42,195 + Ac3H11_3684 0.33 +1.3 42,271 + Ac3H11_3684 0.39 +1.1 42,271 + Ac3H11_3684 0.39 +0.4 42,271 + Ac3H11_3684 0.39 -1.0 42,272 - Ac3H11_3684 0.39 +0.5 42,272 - Ac3H11_3684 0.39 -0.4 42,272 - Ac3H11_3684 0.39 +1.5 42,373 + Ac3H11_3684 0.47 -1.0 42,374 - Ac3H11_3684 0.47 +0.7 42,374 - Ac3H11_3684 0.47 -0.5 42,423 + Ac3H11_3684 0.51 -0.8 42,423 + Ac3H11_3684 0.51 +0.8 42,424 - Ac3H11_3684 0.51 +0.5 42,424 - Ac3H11_3684 0.51 -1.0 42,494 + Ac3H11_3684 0.56 -0.2 42,494 + Ac3H11_3684 0.56 -1.4 42,494 + Ac3H11_3684 0.56 +0.3 42,512 + Ac3H11_3684 0.57 -1.5 42,513 - Ac3H11_3684 0.57 +0.9 42,518 + Ac3H11_3684 0.58 -1.9 42,530 + Ac3H11_3684 0.59 +0.8 42,530 + Ac3H11_3684 0.59 -0.4 42,531 - Ac3H11_3684 0.59 -0.9 42,579 + Ac3H11_3684 0.62 -0.8 42,580 - Ac3H11_3684 0.63 +0.1 42,580 - Ac3H11_3684 0.63 +0.6 42,617 + Ac3H11_3684 0.65 -0.1 42,617 + Ac3H11_3684 0.65 +0.7 42,618 - Ac3H11_3684 0.65 -0.2 42,618 - Ac3H11_3684 0.65 -1.2 42,628 + Ac3H11_3684 0.66 -1.2 42,628 + Ac3H11_3684 0.66 +2.2 42,628 + Ac3H11_3684 0.66 +0.1 42,628 + Ac3H11_3684 0.66 -0.6 42,628 + Ac3H11_3684 0.66 -0.6 42,628 + Ac3H11_3684 0.66 +0.1 42,628 + Ac3H11_3684 0.66 +0.9 42,628 + Ac3H11_3684 0.66 -0.1 42,628 + Ac3H11_3684 0.66 +0.9 42,628 + Ac3H11_3684 0.66 -0.5 42,629 - Ac3H11_3684 0.66 -0.2 42,629 - Ac3H11_3684 0.66 +0.3 42,629 - Ac3H11_3684 0.66 +1.9 42,629 - Ac3H11_3684 0.66 -0.1 42,629 - Ac3H11_3684 0.66 -0.0 42,629 - Ac3H11_3684 0.66 +0.5 42,629 - Ac3H11_3684 0.66 -0.1 42,629 - Ac3H11_3684 0.66 +0.0 42,629 - Ac3H11_3684 0.66 -0.8 42,633 - Ac3H11_3684 0.67 +0.1 42,647 + Ac3H11_3684 0.68 -1.7 42,647 + Ac3H11_3684 0.68 +1.2 42,647 + Ac3H11_3684 0.68 -1.1 42,647 + Ac3H11_3684 0.68 +0.5 42,647 + Ac3H11_3684 0.68 +0.3 42,672 + Ac3H11_3684 0.69 -0.2 42,673 - Ac3H11_3684 0.70 +0.0 42,691 + Ac3H11_3684 0.71 +1.0 42,691 + Ac3H11_3684 0.71 +1.0 42,691 + Ac3H11_3684 0.71 -1.0 42,691 + Ac3H11_3684 0.71 -0.8 42,692 - Ac3H11_3684 0.71 -1.1 42,692 - Ac3H11_3684 0.71 -0.7 42,759 + Ac3H11_3684 0.76 -3.1 42,759 + Ac3H11_3684 0.76 -1.2 42,921 + Ac3H11_3684 0.88 -0.2 42,922 - Ac3H11_3684 0.88 -0.6 42,922 - Ac3H11_3684 0.88 -1.0 43,038 + +0.0 43,038 + +1.1 43,039 - -0.5 43,042 + -1.9 43,042 + +0.5 43,043 - +0.5 43,043 - -0.9 43,096 + -0.0 43,097 - +1.1 43,097 - +1.9 43,150 + -1.0 43,151 - +0.0 43,186 - -0.1 43,189 + -2.1 43,189 + -0.6 43,189 + -0.2 43,190 - +0.6 43,190 - -2.2 43,205 + -0.3 43,205 + +0.7 43,205 + -0.6 43,205 + +0.4 43,205 + +1.5 43,205 + -0.2 43,205 + -0.2 43,205 + +1.3 43,206 - +1.1 43,206 - -0.9 43,206 - +1.6 43,206 - -1.4 43,224 + +0.2 43,224 + +1.1 43,224 + +0.0 43,228 + -0.6 43,229 - +1.1 43,229 - -0.9 43,229 - +0.2 43,229 - -1.0 43,229 - -0.5 43,241 - -1.2 43,241 - +0.4 43,394 + -0.1 43,394 + -3.0 43,522 - Ac3H11_3685 0.19 -0.1 43,673 + Ac3H11_3685 0.41 +2.1 43,673 + Ac3H11_3685 0.41 +0.8 43,673 + Ac3H11_3685 0.41 -1.9 43,673 + Ac3H11_3685 0.41 -0.3 43,673 + Ac3H11_3685 0.41 -0.2 43,673 + Ac3H11_3685 0.41 -0.4 43,673 + Ac3H11_3685 0.41 -1.3 43,674 - Ac3H11_3685 0.41 -1.0 43,674 - Ac3H11_3685 0.41 -1.2 43,674 - Ac3H11_3685 0.41 +0.3 43,674 - Ac3H11_3685 0.41 -0.5 43,674 - Ac3H11_3685 0.41 +0.6 43,674 - Ac3H11_3685 0.41 +0.8 43,674 - Ac3H11_3685 0.41 -0.7 43,910 + Ac3H11_3685 0.76 +0.5 43,910 + Ac3H11_3685 0.76 +1.2 43,910 + Ac3H11_3685 0.76 +0.0 43,911 - Ac3H11_3685 0.76 +0.1 43,940 + Ac3H11_3685 0.80 -0.3
Or see this region's nucleotide sequence