Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3524 and Ac3H11_3525 are separated by 96 nucleotides Ac3H11_3525 and Ac3H11_3526 overlap by 36 nucleotides Ac3H11_3526 and Ac3H11_3527 are separated by 115 nucleotides
Ac3H11_3524 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 70,186 to 71,193
_3524
Ac3H11_3525 - hypothetical protein, at 71,290 to 71,421
_3525
Ac3H11_3526 - Transcriptional regulator, LysR family, at 71,386 to 72,324
_3526
Ac3H11_3527 - hypothetical protein, at 72,440 to 72,925
_3527
Position (kb)
71
72
73 Strain fitness (log2 ratio)
-1
0
1 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.533 kb on - strand, within Ac3H11_3524 at 70.605 kb on - strand, within Ac3H11_3524 at 71.163 kb on + strand at 71.163 kb on + strand at 71.163 kb on + strand at 71.164 kb on - strand at 71.164 kb on - strand at 71.291 kb on + strand at 71.292 kb on - strand at 71.292 kb on - strand at 71.292 kb on - strand at 71.349 kb on + strand, within Ac3H11_3525 at 71.595 kb on + strand, within Ac3H11_3526 at 71.596 kb on - strand, within Ac3H11_3526 at 71.961 kb on + strand, within Ac3H11_3526 at 71.961 kb on + strand, within Ac3H11_3526 at 71.993 kb on - strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.270 kb on + strand at 72.322 kb on + strand at 72.338 kb on - strand at 72.457 kb on + strand at 73.109 kb on - strand at 73.109 kb on - strand at 73.187 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 70,493 + Ac3H11_3524 0.30 -0.3 70,493 + Ac3H11_3524 0.30 -0.7 70,493 + Ac3H11_3524 0.30 -1.6 70,493 + Ac3H11_3524 0.30 +0.7 70,494 - Ac3H11_3524 0.31 +0.5 70,494 - Ac3H11_3524 0.31 -0.8 70,494 - Ac3H11_3524 0.31 +0.6 70,494 - Ac3H11_3524 0.31 -0.2 70,494 - Ac3H11_3524 0.31 -0.6 70,494 - Ac3H11_3524 0.31 +0.7 70,494 - Ac3H11_3524 0.31 -0.1 70,532 + Ac3H11_3524 0.34 -1.2 70,532 + Ac3H11_3524 0.34 +0.0 70,532 + Ac3H11_3524 0.34 -0.0 70,532 + Ac3H11_3524 0.34 +0.9 70,532 + Ac3H11_3524 0.34 -0.3 70,533 - Ac3H11_3524 0.34 -1.6 70,605 - Ac3H11_3524 0.42 -0.5 71,163 + -0.1 71,163 + -0.3 71,163 + -0.3 71,164 - -0.2 71,164 - -0.3 71,291 + -1.0 71,292 - -0.6 71,292 - -0.1 71,292 - +1.3 71,349 + Ac3H11_3525 0.45 -1.6 71,595 + Ac3H11_3526 0.22 -1.0 71,596 - Ac3H11_3526 0.22 +0.3 71,961 + Ac3H11_3526 0.61 -0.6 71,961 + Ac3H11_3526 0.61 +1.5 71,993 - Ac3H11_3526 0.65 -1.4 72,157 + Ac3H11_3526 0.82 +0.3 72,157 + Ac3H11_3526 0.82 +0.0 72,157 + Ac3H11_3526 0.82 +0.7 72,158 - Ac3H11_3526 0.82 -0.2 72,158 - Ac3H11_3526 0.82 -1.4 72,158 - Ac3H11_3526 0.82 +0.2 72,217 + Ac3H11_3526 0.88 +0.4 72,217 + Ac3H11_3526 0.88 +0.7 72,217 + Ac3H11_3526 0.88 +0.5 72,270 + -0.5 72,322 + +0.5 72,338 - -0.7 72,457 + -0.0 73,109 - -1.7 73,109 - -0.8 73,187 - +0.9
Or see this region's nucleotide sequence