Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3463 and Ac3H11_3464 are separated by 768 nucleotides Ac3H11_3464 and Ac3H11_3465 overlap by 4 nucleotides Ac3H11_3465 and Ac3H11_3466 overlap by 1 nucleotides
Ac3H11_3463 - Phage integrase, at 15,158 to 16,351
_3463
Ac3H11_3464 - hypothetical protein, at 17,120 to 17,512
_3464
Ac3H11_3465 - hypothetical protein, at 17,509 to 18,021
_3465
Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156
_3466
Position (kb)
17
18 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.140 kb on + strand, within Ac3H11_3463 at 16.230 kb on - strand, within Ac3H11_3463 at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.245 kb on + strand at 16.246 kb on - strand at 16.246 kb on - strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.249 kb on + strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.250 kb on - strand at 16.326 kb on + strand at 16.326 kb on + strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.327 kb on - strand at 16.330 kb on + strand at 16.330 kb on + strand at 16.330 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.496 kb on + strand at 16.568 kb on + strand at 16.568 kb on - strand at 16.577 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.747 kb on + strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.748 kb on - strand at 16.818 kb on + strand at 16.819 kb on - strand at 16.819 kb on - strand at 16.826 kb on + strand at 17.057 kb on + strand at 17.058 kb on - strand at 17.058 kb on - strand at 17.194 kb on + strand, within Ac3H11_3464 at 17.194 kb on + strand, within Ac3H11_3464 at 17.371 kb on - strand, within Ac3H11_3464 at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.551 kb on + strand at 17.552 kb on - strand at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.611 kb on + strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.612 kb on - strand, within Ac3H11_3465 at 17.684 kb on + strand, within Ac3H11_3465 at 17.684 kb on + strand, within Ac3H11_3465 at 17.685 kb on - strand, within Ac3H11_3465 at 17.685 kb on - strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.687 kb on + strand, within Ac3H11_3465 at 17.792 kb on + strand, within Ac3H11_3465 at 18.027 kb on - strand at 18.043 kb on + strand at 18.043 kb on + strand at 18.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 16,140 + Ac3H11_3463 0.82 -0.4 16,140 + Ac3H11_3463 0.82 +0.4 16,140 + Ac3H11_3463 0.82 -0.6 16,140 + Ac3H11_3463 0.82 +0.4 16,230 - Ac3H11_3463 0.90 -1.1 16,245 + +0.2 16,245 + +0.7 16,245 + -0.3 16,245 + -0.4 16,245 + +0.4 16,246 - -0.3 16,246 - -1.7 16,249 + -0.5 16,249 + +0.2 16,249 + -2.3 16,249 + +1.0 16,249 + -1.7 16,249 + +0.1 16,249 + +0.8 16,250 - +0.1 16,250 - +0.9 16,250 - +1.0 16,250 - -2.1 16,250 - +1.1 16,250 - -0.6 16,250 - -0.7 16,250 - -1.0 16,250 - +0.1 16,250 - +0.8 16,326 + -0.1 16,326 + -0.2 16,327 - +0.3 16,327 - +1.3 16,327 - -0.9 16,327 - -0.1 16,330 + -0.6 16,330 + -2.0 16,330 + +2.2 16,496 + +0.7 16,496 + -0.5 16,496 + +0.1 16,496 + -1.2 16,496 + +0.0 16,496 + +2.5 16,568 + -0.1 16,568 - -0.9 16,577 + +0.9 16,747 + +1.1 16,747 + +0.9 16,747 + -0.3 16,747 + -1.8 16,747 + -0.0 16,747 + -0.3 16,747 + +0.1 16,747 + +0.0 16,747 + +0.3 16,748 - +2.5 16,748 - +0.4 16,748 - -0.4 16,748 - +0.1 16,818 + +0.4 16,819 - -1.1 16,819 - -0.8 16,826 + +1.0 17,057 + +0.1 17,058 - +1.0 17,058 - -0.2 17,194 + Ac3H11_3464 0.19 -2.3 17,194 + Ac3H11_3464 0.19 -1.4 17,371 - Ac3H11_3464 0.64 -1.4 17,551 + +0.9 17,551 + -0.7 17,551 + +0.1 17,551 + -0.1 17,551 + +0.7 17,552 - +0.9 17,611 + Ac3H11_3465 0.20 -1.0 17,611 + Ac3H11_3465 0.20 -0.8 17,611 + Ac3H11_3465 0.20 +0.4 17,611 + Ac3H11_3465 0.20 -2.2 17,611 + Ac3H11_3465 0.20 -1.6 17,612 - Ac3H11_3465 0.20 -0.3 17,612 - Ac3H11_3465 0.20 +0.8 17,612 - Ac3H11_3465 0.20 -0.9 17,684 + Ac3H11_3465 0.34 -0.2 17,684 + Ac3H11_3465 0.34 +0.5 17,685 - Ac3H11_3465 0.34 +0.4 17,685 - Ac3H11_3465 0.34 +1.1 17,687 + Ac3H11_3465 0.35 -0.9 17,687 + Ac3H11_3465 0.35 +0.1 17,687 + Ac3H11_3465 0.35 +0.3 17,687 + Ac3H11_3465 0.35 -0.7 17,792 + Ac3H11_3465 0.55 -0.8 18,027 - +1.3 18,043 + -0.9 18,043 + +0.8 18,131 + +0.3
Or see this region's nucleotide sequence