Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3464

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3463 and Ac3H11_3464 are separated by 768 nucleotidesAc3H11_3464 and Ac3H11_3465 overlap by 4 nucleotidesAc3H11_3465 and Ac3H11_3466 overlap by 1 nucleotides Ac3H11_3463 - Phage integrase, at 15,158 to 16,351 _3463 Ac3H11_3464 - hypothetical protein, at 17,120 to 17,512 _3464 Ac3H11_3465 - hypothetical protein, at 17,509 to 18,021 _3465 Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156 _3466 Position (kb) 17 18Strain fitness (log2 ratio) -2 -1 0 1 2at 16.140 kb on + strand, within Ac3H11_3463at 16.140 kb on + strand, within Ac3H11_3463at 16.140 kb on + strand, within Ac3H11_3463at 16.140 kb on + strand, within Ac3H11_3463at 16.230 kb on - strand, within Ac3H11_3463at 16.245 kb on + strandat 16.245 kb on + strandat 16.245 kb on + strandat 16.245 kb on + strandat 16.245 kb on + strandat 16.246 kb on - strandat 16.246 kb on - strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.249 kb on + strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.250 kb on - strandat 16.326 kb on + strandat 16.326 kb on + strandat 16.327 kb on - strandat 16.327 kb on - strandat 16.327 kb on - strandat 16.327 kb on - strandat 16.330 kb on + strandat 16.330 kb on + strandat 16.330 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.496 kb on + strandat 16.568 kb on + strandat 16.568 kb on - strandat 16.577 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.747 kb on + strandat 16.748 kb on - strandat 16.748 kb on - strandat 16.748 kb on - strandat 16.748 kb on - strandat 16.818 kb on + strandat 16.819 kb on - strandat 16.819 kb on - strandat 16.826 kb on + strandat 17.057 kb on + strandat 17.058 kb on - strandat 17.058 kb on - strandat 17.194 kb on + strand, within Ac3H11_3464at 17.194 kb on + strand, within Ac3H11_3464at 17.371 kb on - strand, within Ac3H11_3464at 17.551 kb on + strandat 17.551 kb on + strandat 17.551 kb on + strandat 17.551 kb on + strandat 17.551 kb on + strandat 17.552 kb on - strandat 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.611 kb on + strand, within Ac3H11_3465at 17.612 kb on - strand, within Ac3H11_3465at 17.612 kb on - strand, within Ac3H11_3465at 17.612 kb on - strand, within Ac3H11_3465at 17.684 kb on + strand, within Ac3H11_3465at 17.684 kb on + strand, within Ac3H11_3465at 17.685 kb on - strand, within Ac3H11_3465at 17.685 kb on - strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.687 kb on + strand, within Ac3H11_3465at 17.792 kb on + strand, within Ac3H11_3465at 18.027 kb on - strandat 18.043 kb on + strandat 18.043 kb on + strandat 18.131 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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16,140 + Ac3H11_3463 0.82 -0.4
16,140 + Ac3H11_3463 0.82 +0.4
16,140 + Ac3H11_3463 0.82 -0.6
16,140 + Ac3H11_3463 0.82 +0.4
16,230 - Ac3H11_3463 0.90 -1.1
16,245 + +0.2
16,245 + +0.7
16,245 + -0.3
16,245 + -0.4
16,245 + +0.4
16,246 - -0.3
16,246 - -1.7
16,249 + -0.5
16,249 + +0.2
16,249 + -2.3
16,249 + +1.0
16,249 + -1.7
16,249 + +0.1
16,249 + +0.8
16,250 - +0.1
16,250 - +0.9
16,250 - +1.0
16,250 - -2.1
16,250 - +1.1
16,250 - -0.6
16,250 - -0.7
16,250 - -1.0
16,250 - +0.1
16,250 - +0.8
16,326 + -0.1
16,326 + -0.2
16,327 - +0.3
16,327 - +1.3
16,327 - -0.9
16,327 - -0.1
16,330 + -0.6
16,330 + -2.0
16,330 + +2.2
16,496 + +0.7
16,496 + -0.5
16,496 + +0.1
16,496 + -1.2
16,496 + +0.0
16,496 + +2.5
16,568 + -0.1
16,568 - -0.9
16,577 + +0.9
16,747 + +1.1
16,747 + +0.9
16,747 + -0.3
16,747 + -1.8
16,747 + -0.0
16,747 + -0.3
16,747 + +0.1
16,747 + +0.0
16,747 + +0.3
16,748 - +2.5
16,748 - +0.4
16,748 - -0.4
16,748 - +0.1
16,818 + +0.4
16,819 - -1.1
16,819 - -0.8
16,826 + +1.0
17,057 + +0.1
17,058 - +1.0
17,058 - -0.2
17,194 + Ac3H11_3464 0.19 -2.3
17,194 + Ac3H11_3464 0.19 -1.4
17,371 - Ac3H11_3464 0.64 -1.4
17,551 + +0.9
17,551 + -0.7
17,551 + +0.1
17,551 + -0.1
17,551 + +0.7
17,552 - +0.9
17,611 + Ac3H11_3465 0.20 -1.0
17,611 + Ac3H11_3465 0.20 -0.8
17,611 + Ac3H11_3465 0.20 +0.4
17,611 + Ac3H11_3465 0.20 -2.2
17,611 + Ac3H11_3465 0.20 -1.6
17,612 - Ac3H11_3465 0.20 -0.3
17,612 - Ac3H11_3465 0.20 +0.8
17,612 - Ac3H11_3465 0.20 -0.9
17,684 + Ac3H11_3465 0.34 -0.2
17,684 + Ac3H11_3465 0.34 +0.5
17,685 - Ac3H11_3465 0.34 +0.4
17,685 - Ac3H11_3465 0.34 +1.1
17,687 + Ac3H11_3465 0.35 -0.9
17,687 + Ac3H11_3465 0.35 +0.1
17,687 + Ac3H11_3465 0.35 +0.3
17,687 + Ac3H11_3465 0.35 -0.7
17,792 + Ac3H11_3465 0.55 -0.8
18,027 - +1.3
18,043 + -0.9
18,043 + +0.8
18,131 + +0.3

Or see this region's nucleotide sequence