Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3391

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3390 and Ac3H11_3391 are separated by 47 nucleotidesAc3H11_3391 and Ac3H11_3392 are separated by 27 nucleotidesAc3H11_3392 and Ac3H11_3393 are separated by 65 nucleotides Ac3H11_3390 - Response regulator of the LytR/AlgR family, at 69,734 to 70,738 _3390 Ac3H11_3391 - miscellaneous; unknown, at 70,786 to 71,109 _3391 Ac3H11_3392 - Transcriptional regulator, DeoR family, at 71,137 to 71,877 _3392 Ac3H11_3393 - Probable transcription regulator, at 71,943 to 72,434 _3393 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1at 70.043 kb on + strand, within Ac3H11_3390at 70.044 kb on - strand, within Ac3H11_3390at 70.044 kb on - strand, within Ac3H11_3390at 70.092 kb on - strand, within Ac3H11_3390at 70.092 kb on - strand, within Ac3H11_3390at 70.092 kb on - strand, within Ac3H11_3390at 70.092 kb on - strand, within Ac3H11_3390at 70.146 kb on - strand, within Ac3H11_3390at 70.146 kb on - strand, within Ac3H11_3390at 70.146 kb on - strand, within Ac3H11_3390at 70.151 kb on + strand, within Ac3H11_3390at 70.151 kb on + strand, within Ac3H11_3390at 70.151 kb on + strand, within Ac3H11_3390at 70.151 kb on + strand, within Ac3H11_3390at 70.152 kb on - strand, within Ac3H11_3390at 70.152 kb on - strand, within Ac3H11_3390at 70.152 kb on - strand, within Ac3H11_3390at 70.152 kb on - strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.172 kb on + strand, within Ac3H11_3390at 70.173 kb on - strand, within Ac3H11_3390at 70.173 kb on - strand, within Ac3H11_3390at 70.173 kb on - strand, within Ac3H11_3390at 70.173 kb on - strand, within Ac3H11_3390at 70.472 kb on + strand, within Ac3H11_3390at 70.473 kb on - strand, within Ac3H11_3390at 70.473 kb on - strand, within Ac3H11_3390at 70.502 kb on + strand, within Ac3H11_3390at 70.503 kb on - strand, within Ac3H11_3390at 70.577 kb on + strand, within Ac3H11_3390at 70.577 kb on + strand, within Ac3H11_3390at 70.577 kb on + strand, within Ac3H11_3390at 70.578 kb on - strand, within Ac3H11_3390at 70.680 kb on - strandat 70.812 kb on + strandat 70.813 kb on - strandat 70.882 kb on + strand, within Ac3H11_3391at 70.888 kb on + strand, within Ac3H11_3391at 70.889 kb on - strand, within Ac3H11_3391at 70.964 kb on + strand, within Ac3H11_3391at 70.965 kb on - strand, within Ac3H11_3391at 71.024 kb on + strand, within Ac3H11_3391at 71.025 kb on - strand, within Ac3H11_3391at 71.025 kb on - strand, within Ac3H11_3391at 71.028 kb on + strand, within Ac3H11_3391at 71.028 kb on + strand, within Ac3H11_3391at 71.028 kb on + strand, within Ac3H11_3391at 71.028 kb on + strand, within Ac3H11_3391at 71.029 kb on - strand, within Ac3H11_3391at 71.029 kb on - strand, within Ac3H11_3391at 71.029 kb on - strand, within Ac3H11_3391at 71.029 kb on - strand, within Ac3H11_3391at 71.029 kb on - strand, within Ac3H11_3391at 71.029 kb on - strand, within Ac3H11_3391at 71.029 kb on - strand, within Ac3H11_3391at 71.138 kb on + strandat 71.138 kb on + strandat 71.139 kb on - strandat 71.269 kb on + strand, within Ac3H11_3392at 71.360 kb on + strand, within Ac3H11_3392at 71.360 kb on + strand, within Ac3H11_3392at 71.360 kb on + strand, within Ac3H11_3392at 71.360 kb on + strand, within Ac3H11_3392at 71.418 kb on - strand, within Ac3H11_3392at 71.418 kb on - strand, within Ac3H11_3392at 71.418 kb on - strand, within Ac3H11_3392at 71.510 kb on + strand, within Ac3H11_3392at 71.511 kb on - strand, within Ac3H11_3392at 71.769 kb on - strand, within Ac3H11_3392at 71.899 kb on + strandat 71.930 kb on - strandat 71.989 kb on + strandat 71.990 kb on - strandat 71.990 kb on - strandat 71.990 kb on - strandat 71.990 kb on - strandat 72.043 kb on + strand, within Ac3H11_3393at 72.043 kb on + strand, within Ac3H11_3393at 72.043 kb on + strand, within Ac3H11_3393at 72.043 kb on + strand, within Ac3H11_3393

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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70,043 + Ac3H11_3390 0.31 +0.6
70,044 - Ac3H11_3390 0.31 -0.5
70,044 - Ac3H11_3390 0.31 +0.3
70,092 - Ac3H11_3390 0.36 +0.4
70,092 - Ac3H11_3390 0.36 -0.1
70,092 - Ac3H11_3390 0.36 +0.9
70,092 - Ac3H11_3390 0.36 -0.3
70,146 - Ac3H11_3390 0.41 +0.0
70,146 - Ac3H11_3390 0.41 -0.1
70,146 - Ac3H11_3390 0.41 +0.1
70,151 + Ac3H11_3390 0.41 +0.3
70,151 + Ac3H11_3390 0.41 -1.0
70,151 + Ac3H11_3390 0.41 +0.5
70,151 + Ac3H11_3390 0.41 -0.3
70,152 - Ac3H11_3390 0.42 -0.3
70,152 - Ac3H11_3390 0.42 +0.6
70,152 - Ac3H11_3390 0.42 +0.9
70,152 - Ac3H11_3390 0.42 +1.3
70,172 + Ac3H11_3390 0.44 +0.7
70,172 + Ac3H11_3390 0.44 -1.2
70,172 + Ac3H11_3390 0.44 +0.8
70,172 + Ac3H11_3390 0.44 -2.2
70,172 + Ac3H11_3390 0.44 +0.2
70,172 + Ac3H11_3390 0.44 +0.0
70,172 + Ac3H11_3390 0.44 -1.4
70,172 + Ac3H11_3390 0.44 -0.1
70,173 - Ac3H11_3390 0.44 -0.8
70,173 - Ac3H11_3390 0.44 +0.3
70,173 - Ac3H11_3390 0.44 +0.3
70,173 - Ac3H11_3390 0.44 +0.4
70,472 + Ac3H11_3390 0.73 -0.3
70,473 - Ac3H11_3390 0.74 -2.6
70,473 - Ac3H11_3390 0.74 +1.2
70,502 + Ac3H11_3390 0.76 -0.6
70,503 - Ac3H11_3390 0.77 -0.3
70,577 + Ac3H11_3390 0.84 +0.2
70,577 + Ac3H11_3390 0.84 +0.4
70,577 + Ac3H11_3390 0.84 -0.2
70,578 - Ac3H11_3390 0.84 -0.5
70,680 - -1.9
70,812 + -1.5
70,813 - +1.1
70,882 + Ac3H11_3391 0.30 -0.2
70,888 + Ac3H11_3391 0.31 -1.0
70,889 - Ac3H11_3391 0.32 -0.5
70,964 + Ac3H11_3391 0.55 -0.3
70,965 - Ac3H11_3391 0.55 +0.3
71,024 + Ac3H11_3391 0.73 -0.7
71,025 - Ac3H11_3391 0.74 -1.9
71,025 - Ac3H11_3391 0.74 -0.5
71,028 + Ac3H11_3391 0.75 +0.3
71,028 + Ac3H11_3391 0.75 +0.1
71,028 + Ac3H11_3391 0.75 -0.5
71,028 + Ac3H11_3391 0.75 -0.2
71,029 - Ac3H11_3391 0.75 -2.0
71,029 - Ac3H11_3391 0.75 +0.6
71,029 - Ac3H11_3391 0.75 +0.6
71,029 - Ac3H11_3391 0.75 -1.2
71,029 - Ac3H11_3391 0.75 -0.2
71,029 - Ac3H11_3391 0.75 -0.5
71,029 - Ac3H11_3391 0.75 -0.2
71,138 + +0.1
71,138 + +0.4
71,139 - +0.2
71,269 + Ac3H11_3392 0.18 +1.0
71,360 + Ac3H11_3392 0.30 +0.7
71,360 + Ac3H11_3392 0.30 -0.3
71,360 + Ac3H11_3392 0.30 -0.9
71,360 + Ac3H11_3392 0.30 -0.8
71,418 - Ac3H11_3392 0.38 +0.5
71,418 - Ac3H11_3392 0.38 +1.5
71,418 - Ac3H11_3392 0.38 -0.2
71,510 + Ac3H11_3392 0.50 -2.3
71,511 - Ac3H11_3392 0.50 -1.9
71,769 - Ac3H11_3392 0.85 +0.8
71,899 + +0.3
71,930 - -0.6
71,989 + +0.1
71,990 - -2.1
71,990 - -0.4
71,990 - +0.7
71,990 - -1.2
72,043 + Ac3H11_3393 0.20 -1.3
72,043 + Ac3H11_3393 0.20 +1.1
72,043 + Ac3H11_3393 0.20 -0.5
72,043 + Ac3H11_3393 0.20 -1.3

Or see this region's nucleotide sequence