Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3281 and Ac3H11_3282 are separated by 216 nucleotides Ac3H11_3282 and Ac3H11_3283 are separated by 315 nucleotides
Ac3H11_3281 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 12,646 to 13,491
_3281
Ac3H11_3282 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 13,708 to 15,012
_3282
Ac3H11_3283 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 15,328 to 16,983
_3283
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.838 kb on + strand, within Ac3H11_3281 at 12.838 kb on + strand, within Ac3H11_3281 at 12.838 kb on + strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.839 kb on - strand, within Ac3H11_3281 at 12.853 kb on + strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.854 kb on - strand, within Ac3H11_3281 at 12.885 kb on + strand, within Ac3H11_3281 at 12.885 kb on + strand, within Ac3H11_3281 at 12.885 kb on + strand, within Ac3H11_3281 at 12.886 kb on - strand at 12.886 kb on - strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.994 kb on + strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 12.995 kb on - strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.060 kb on + strand, within Ac3H11_3281 at 13.061 kb on - strand, within Ac3H11_3281 at 13.061 kb on - strand, within Ac3H11_3281 at 13.315 kb on + strand, within Ac3H11_3281 at 13.315 kb on + strand, within Ac3H11_3281 at 13.315 kb on + strand, within Ac3H11_3281 at 13.315 kb on + strand, within Ac3H11_3281 at 13.316 kb on - strand, within Ac3H11_3281 at 13.316 kb on - strand, within Ac3H11_3281 at 13.489 kb on + strand at 13.489 kb on + strand at 13.489 kb on + strand at 13.489 kb on + strand at 13.489 kb on + strand at 13.490 kb on - strand at 13.490 kb on - strand at 13.490 kb on - strand at 13.490 kb on - strand at 13.490 kb on - strand at 13.586 kb on + strand at 13.586 kb on + strand at 13.586 kb on + strand at 13.587 kb on - strand at 13.587 kb on - strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.668 kb on + strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 13.669 kb on - strand at 14.162 kb on + strand, within Ac3H11_3282 at 15.010 kb on + strand at 15.011 kb on - strand at 15.011 kb on - strand at 15.113 kb on + strand at 15.113 kb on + strand at 15.113 kb on + strand at 15.114 kb on - strand at 15.114 kb on - strand at 15.114 kb on - strand at 15.114 kb on - strand at 15.235 kb on + strand at 15.235 kb on + strand at 15.236 kb on - strand at 15.239 kb on + strand at 15.239 kb on + strand at 15.240 kb on - strand at 15.240 kb on - strand at 15.240 kb on - strand at 15.245 kb on + strand at 15.245 kb on + strand at 15.245 kb on + strand at 15.245 kb on + strand at 15.246 kb on - strand at 15.246 kb on - strand at 15.302 kb on + strand at 15.302 kb on + strand at 15.302 kb on + strand at 15.302 kb on + strand at 15.303 kb on - strand at 15.303 kb on - strand at 15.303 kb on - strand at 15.303 kb on - strand at 15.303 kb on - strand at 15.303 kb on - strand at 15.303 kb on - strand at 15.466 kb on + strand at 15.466 kb on + strand at 15.466 kb on + strand at 15.466 kb on + strand at 15.490 kb on + strand at 15.491 kb on - strand at 15.491 kb on - strand at 15.574 kb on + strand, within Ac3H11_3283 at 15.575 kb on - strand, within Ac3H11_3283 at 15.657 kb on + strand, within Ac3H11_3283 at 15.658 kb on - strand, within Ac3H11_3283 at 15.658 kb on - strand, within Ac3H11_3283 at 15.658 kb on - strand, within Ac3H11_3283 at 15.658 kb on - strand, within Ac3H11_3283 at 15.658 kb on - strand, within Ac3H11_3283 at 15.775 kb on + strand, within Ac3H11_3283 at 15.775 kb on + strand, within Ac3H11_3283 at 15.775 kb on + strand, within Ac3H11_3283 at 15.775 kb on + strand, within Ac3H11_3283 at 15.775 kb on + strand, within Ac3H11_3283 at 15.776 kb on - strand, within Ac3H11_3283 at 15.776 kb on - strand, within Ac3H11_3283 at 15.776 kb on - strand, within Ac3H11_3283 at 15.892 kb on + strand, within Ac3H11_3283 at 15.892 kb on + strand, within Ac3H11_3283 at 15.907 kb on + strand, within Ac3H11_3283 at 15.907 kb on + strand, within Ac3H11_3283 at 15.907 kb on + strand, within Ac3H11_3283 at 15.907 kb on + strand, within Ac3H11_3283
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 12,838 + Ac3H11_3281 0.23 +0.3 12,838 + Ac3H11_3281 0.23 -0.1 12,838 + Ac3H11_3281 0.23 -0.8 12,839 - Ac3H11_3281 0.23 +0.1 12,839 - Ac3H11_3281 0.23 -1.1 12,839 - Ac3H11_3281 0.23 +0.4 12,839 - Ac3H11_3281 0.23 -0.5 12,839 - Ac3H11_3281 0.23 -0.3 12,853 + Ac3H11_3281 0.24 +0.2 12,854 - Ac3H11_3281 0.25 -0.4 12,854 - Ac3H11_3281 0.25 +1.0 12,854 - Ac3H11_3281 0.25 +0.7 12,854 - Ac3H11_3281 0.25 +1.2 12,854 - Ac3H11_3281 0.25 +1.3 12,885 + Ac3H11_3281 0.28 -0.1 12,885 + Ac3H11_3281 0.28 +0.9 12,885 + Ac3H11_3281 0.28 +0.9 12,886 - -0.1 12,886 - Ac3H11_3281 0.28 -0.2 12,994 + Ac3H11_3281 0.41 -2.7 12,994 + Ac3H11_3281 0.41 +0.7 12,994 + Ac3H11_3281 0.41 -1.1 12,994 + Ac3H11_3281 0.41 -0.9 12,994 + Ac3H11_3281 0.41 -0.5 12,995 - Ac3H11_3281 0.41 +0.5 12,995 - Ac3H11_3281 0.41 +0.7 12,995 - Ac3H11_3281 0.41 -1.3 12,995 - Ac3H11_3281 0.41 +0.6 13,060 + Ac3H11_3281 0.49 -1.5 13,060 + Ac3H11_3281 0.49 +0.0 13,060 + Ac3H11_3281 0.49 +1.5 13,060 + Ac3H11_3281 0.49 -0.5 13,060 + Ac3H11_3281 0.49 +2.1 13,060 + Ac3H11_3281 0.49 -0.7 13,060 + Ac3H11_3281 0.49 +0.6 13,060 + Ac3H11_3281 0.49 -0.6 13,060 + Ac3H11_3281 0.49 -1.9 13,060 + Ac3H11_3281 0.49 +1.2 13,061 - Ac3H11_3281 0.49 +0.1 13,061 - Ac3H11_3281 0.49 +0.8 13,315 + Ac3H11_3281 0.79 +0.9 13,315 + Ac3H11_3281 0.79 -0.4 13,315 + Ac3H11_3281 0.79 +0.4 13,315 + Ac3H11_3281 0.79 +0.8 13,316 - Ac3H11_3281 0.79 +0.8 13,316 - Ac3H11_3281 0.79 -1.4 13,489 + -2.0 13,489 + -0.9 13,489 + -1.0 13,489 + +0.2 13,489 + +0.3 13,490 - -2.7 13,490 - +1.1 13,490 - -0.4 13,490 - -0.3 13,490 - -0.4 13,586 + -1.3 13,586 + +0.5 13,586 + +0.6 13,587 - -1.6 13,587 - -2.1 13,668 + +1.1 13,668 + -2.6 13,668 + -1.3 13,668 + -0.0 13,668 + +0.4 13,668 + +1.1 13,668 + -0.7 13,668 + +0.9 13,668 + -0.1 13,668 + -0.5 13,669 - -0.1 13,669 - -1.6 13,669 - +0.6 13,669 - -1.7 13,669 - +0.8 13,669 - -1.5 13,669 - -0.0 13,669 - +0.1 13,669 - -1.5 13,669 - -0.7 13,669 - -1.1 14,162 + Ac3H11_3282 0.35 +0.1 15,010 + +1.1 15,011 - -0.3 15,011 - +0.6 15,113 + +1.5 15,113 + +0.8 15,113 + +0.2 15,114 - +0.1 15,114 - +0.4 15,114 - +0.5 15,114 - -1.1 15,235 + +0.0 15,235 + -1.6 15,236 - +1.9 15,239 + +0.7 15,239 + -2.8 15,240 - -0.3 15,240 - -0.4 15,240 - +0.7 15,245 + -0.1 15,245 + -1.8 15,245 + -0.4 15,245 + -2.3 15,246 - +0.5 15,246 - -0.0 15,302 + -0.6 15,302 + +1.9 15,302 + +0.3 15,302 + +0.6 15,303 - +0.0 15,303 - +1.2 15,303 - +0.5 15,303 - -2.9 15,303 - +0.6 15,303 - -0.6 15,303 - +2.5 15,466 + -0.1 15,466 + -0.4 15,466 + +1.0 15,466 + +0.2 15,490 + -0.9 15,491 - +1.7 15,491 - -0.3 15,574 + Ac3H11_3283 0.15 +0.2 15,575 - Ac3H11_3283 0.15 +0.2 15,657 + Ac3H11_3283 0.20 -1.3 15,658 - Ac3H11_3283 0.20 +0.7 15,658 - Ac3H11_3283 0.20 +0.5 15,658 - Ac3H11_3283 0.20 -0.4 15,658 - Ac3H11_3283 0.20 -0.5 15,658 - Ac3H11_3283 0.20 +0.5 15,775 + Ac3H11_3283 0.27 +1.3 15,775 + Ac3H11_3283 0.27 +0.8 15,775 + Ac3H11_3283 0.27 +0.7 15,775 + Ac3H11_3283 0.27 +1.7 15,775 + Ac3H11_3283 0.27 +1.6 15,776 - Ac3H11_3283 0.27 +2.0 15,776 - Ac3H11_3283 0.27 +1.7 15,776 - Ac3H11_3283 0.27 +1.2 15,892 + Ac3H11_3283 0.34 -0.5 15,892 + Ac3H11_3283 0.34 +0.8 15,907 + Ac3H11_3283 0.35 +0.8 15,907 + Ac3H11_3283 0.35 -0.1 15,907 + Ac3H11_3283 0.35 +1.9 15,907 + Ac3H11_3283 0.35 -0.8
Or see this region's nucleotide sequence