Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3189

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3188 and Ac3H11_3189 are separated by 83 nucleotidesAc3H11_3189 and Ac3H11_3190 are separated by 0 nucleotidesAc3H11_3190 and Ac3H11_3191 are separated by 214 nucleotides Ac3H11_3188 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 88,988 to 90,778 _3188 Ac3H11_3189 - Electron transfer flavoprotein, alpha subunit, at 90,862 to 91,794 _3189 Ac3H11_3190 - Electron transfer flavoprotein, beta subunit, at 91,795 to 92,544 _3190 Ac3H11_3191 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 92,759 to 94,075 _3191 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 89.886 kb on + strand, within Ac3H11_3188at 89.886 kb on + strand, within Ac3H11_3188at 89.886 kb on + strand, within Ac3H11_3188at 89.886 kb on + strand, within Ac3H11_3188at 89.887 kb on - strand, within Ac3H11_3188at 89.887 kb on - strand, within Ac3H11_3188at 89.916 kb on + strand, within Ac3H11_3188at 89.917 kb on - strand, within Ac3H11_3188at 89.917 kb on - strand, within Ac3H11_3188at 89.917 kb on - strand, within Ac3H11_3188at 89.917 kb on - strand, within Ac3H11_3188at 89.917 kb on - strand, within Ac3H11_3188at 89.992 kb on + strand, within Ac3H11_3188at 90.186 kb on + strand, within Ac3H11_3188at 90.187 kb on - strand, within Ac3H11_3188at 90.187 kb on - strand, within Ac3H11_3188at 90.187 kb on - strand, within Ac3H11_3188at 90.187 kb on - strand, within Ac3H11_3188at 90.187 kb on - strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.219 kb on + strand, within Ac3H11_3188at 90.220 kb on - strandat 90.220 kb on - strand, within Ac3H11_3188at 90.220 kb on - strand, within Ac3H11_3188at 90.220 kb on - strand, within Ac3H11_3188at 90.220 kb on - strand, within Ac3H11_3188at 90.220 kb on - strand, within Ac3H11_3188at 90.220 kb on - strand, within Ac3H11_3188at 90.220 kb on - strand, within Ac3H11_3188at 90.220 kb on - strand, within Ac3H11_3188at 90.336 kb on + strand, within Ac3H11_3188at 90.336 kb on + strand, within Ac3H11_3188at 90.336 kb on + strand, within Ac3H11_3188at 90.336 kb on + strand, within Ac3H11_3188at 90.336 kb on + strand, within Ac3H11_3188at 90.336 kb on + strand, within Ac3H11_3188at 90.336 kb on + strand, within Ac3H11_3188at 90.337 kb on - strand, within Ac3H11_3188at 90.337 kb on - strand, within Ac3H11_3188at 90.337 kb on - strand, within Ac3H11_3188at 90.337 kb on - strand, within Ac3H11_3188at 90.337 kb on - strand, within Ac3H11_3188at 90.337 kb on - strand, within Ac3H11_3188at 90.771 kb on + strandat 90.771 kb on + strandat 90.771 kb on + strandat 90.771 kb on + strandat 90.772 kb on - strandat 90.772 kb on - strandat 90.863 kb on + strandat 90.863 kb on + strandat 90.863 kb on + strandat 90.863 kb on + strandat 90.864 kb on - strandat 92.600 kb on + strandat 92.600 kb on + strandat 92.601 kb on - strandat 92.601 kb on - strandat 92.601 kb on - strandat 92.624 kb on + strandat 92.624 kb on + strandat 92.624 kb on + strandat 92.625 kb on - strandat 92.625 kb on - strandat 92.625 kb on - strandat 92.682 kb on + strandat 92.684 kb on + strandat 92.684 kb on + strandat 92.685 kb on - strandat 92.685 kb on - strandat 92.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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89,886 + Ac3H11_3188 0.50 -3.7
89,886 + Ac3H11_3188 0.50 +3.7
89,886 + Ac3H11_3188 0.50 -1.6
89,886 + Ac3H11_3188 0.50 +2.0
89,887 - Ac3H11_3188 0.50 -0.6
89,887 - Ac3H11_3188 0.50 +0.2
89,916 + Ac3H11_3188 0.52 +2.6
89,917 - Ac3H11_3188 0.52 +1.0
89,917 - Ac3H11_3188 0.52 +0.5
89,917 - Ac3H11_3188 0.52 -1.3
89,917 - Ac3H11_3188 0.52 -1.2
89,917 - Ac3H11_3188 0.52 -0.3
89,992 + Ac3H11_3188 0.56 +0.4
90,186 + Ac3H11_3188 0.67 -0.1
90,187 - Ac3H11_3188 0.67 -0.8
90,187 - Ac3H11_3188 0.67 +0.5
90,187 - Ac3H11_3188 0.67 +0.4
90,187 - Ac3H11_3188 0.67 +3.3
90,187 - Ac3H11_3188 0.67 -1.0
90,219 + Ac3H11_3188 0.69 -1.2
90,219 + Ac3H11_3188 0.69 -1.4
90,219 + Ac3H11_3188 0.69 -0.3
90,219 + Ac3H11_3188 0.69 -3.2
90,219 + Ac3H11_3188 0.69 +0.7
90,219 + Ac3H11_3188 0.69 +2.1
90,219 + Ac3H11_3188 0.69 +0.3
90,219 + Ac3H11_3188 0.69 -0.1
90,219 + Ac3H11_3188 0.69 +2.0
90,219 + Ac3H11_3188 0.69 -1.7
90,219 + Ac3H11_3188 0.69 +0.7
90,220 - -0.6
90,220 - Ac3H11_3188 0.69 +0.7
90,220 - Ac3H11_3188 0.69 -0.2
90,220 - Ac3H11_3188 0.69 +0.4
90,220 - Ac3H11_3188 0.69 +0.6
90,220 - Ac3H11_3188 0.69 -0.3
90,220 - Ac3H11_3188 0.69 +0.7
90,220 - Ac3H11_3188 0.69 -0.0
90,220 - Ac3H11_3188 0.69 -1.0
90,336 + Ac3H11_3188 0.75 -0.3
90,336 + Ac3H11_3188 0.75 -0.0
90,336 + Ac3H11_3188 0.75 +0.0
90,336 + Ac3H11_3188 0.75 -1.2
90,336 + Ac3H11_3188 0.75 -0.3
90,336 + Ac3H11_3188 0.75 -0.6
90,336 + Ac3H11_3188 0.75 -1.2
90,337 - Ac3H11_3188 0.75 -0.2
90,337 - Ac3H11_3188 0.75 -0.0
90,337 - Ac3H11_3188 0.75 +0.4
90,337 - Ac3H11_3188 0.75 +1.3
90,337 - Ac3H11_3188 0.75 +0.3
90,337 - Ac3H11_3188 0.75 -2.6
90,771 + -0.8
90,771 + +0.2
90,771 + +0.2
90,771 + -0.5
90,772 - +1.2
90,772 - +0.5
90,863 + +0.3
90,863 + +0.4
90,863 + +0.2
90,863 + +4.0
90,864 - -1.4
92,600 + +0.1
92,600 + +0.3
92,601 - -1.6
92,601 - -0.3
92,601 - -0.4
92,624 + +1.0
92,624 + -1.4
92,624 + +0.4
92,625 - -0.0
92,625 - -0.9
92,625 - -0.9
92,682 + -0.5
92,684 + -0.0
92,684 + -1.1
92,685 - +0.2
92,685 - -0.6
92,685 - +1.2

Or see this region's nucleotide sequence