Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3186

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3185 and Ac3H11_3186 overlap by 1 nucleotidesAc3H11_3186 and Ac3H11_3187 are separated by 51 nucleotides Ac3H11_3185 - Extracellular ligand-binding receptor, at 86,515 to 87,648 _3185 Ac3H11_3186 - hypothetical protein, at 87,648 to 87,848 _3186 Ac3H11_3187 - Dioxygenases related to 2-nitropropane dioxygenase, at 87,900 to 88,853 _3187 Position (kb) 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3at 86.777 kb on + strand, within Ac3H11_3185at 86.778 kb on - strand, within Ac3H11_3185at 86.900 kb on + strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.901 kb on - strand, within Ac3H11_3185at 86.903 kb on + strand, within Ac3H11_3185at 86.903 kb on + strand, within Ac3H11_3185at 86.942 kb on + strand, within Ac3H11_3185at 86.943 kb on - strand, within Ac3H11_3185at 86.943 kb on - strand, within Ac3H11_3185at 86.943 kb on - strand, within Ac3H11_3185at 87.043 kb on + strand, within Ac3H11_3185at 87.043 kb on + strand, within Ac3H11_3185at 87.044 kb on - strand, within Ac3H11_3185at 87.134 kb on + strand, within Ac3H11_3185at 87.135 kb on - strand, within Ac3H11_3185at 87.227 kb on + strand, within Ac3H11_3185at 87.227 kb on + strand, within Ac3H11_3185at 87.227 kb on + strand, within Ac3H11_3185at 87.227 kb on + strand, within Ac3H11_3185at 87.227 kb on + strand, within Ac3H11_3185at 87.227 kb on + strand, within Ac3H11_3185at 87.228 kb on - strand, within Ac3H11_3185at 87.228 kb on - strand, within Ac3H11_3185at 87.228 kb on - strand, within Ac3H11_3185at 87.344 kb on + strand, within Ac3H11_3185at 87.344 kb on + strand, within Ac3H11_3185at 87.344 kb on + strand, within Ac3H11_3185at 87.344 kb on + strand, within Ac3H11_3185at 87.344 kb on + strand, within Ac3H11_3185at 87.345 kb on - strand, within Ac3H11_3185at 87.345 kb on - strand, within Ac3H11_3185at 87.345 kb on - strand, within Ac3H11_3185at 87.345 kb on - strand, within Ac3H11_3185at 87.345 kb on - strand, within Ac3H11_3185at 87.431 kb on + strand, within Ac3H11_3185at 87.432 kb on - strand, within Ac3H11_3185at 87.432 kb on - strand, within Ac3H11_3185at 87.503 kb on + strand, within Ac3H11_3185at 87.504 kb on - strand, within Ac3H11_3185at 87.632 kb on - strandat 87.632 kb on - strandat 87.854 kb on - strandat 87.854 kb on - strandat 87.931 kb on + strandat 87.932 kb on - strandat 87.932 kb on - strandat 88.120 kb on + strand, within Ac3H11_3187at 88.120 kb on + strand, within Ac3H11_3187at 88.120 kb on + strand, within Ac3H11_3187at 88.120 kb on + strand, within Ac3H11_3187at 88.121 kb on - strand, within Ac3H11_3187at 88.121 kb on - strand, within Ac3H11_3187at 88.153 kb on + strand, within Ac3H11_3187at 88.195 kb on + strand, within Ac3H11_3187at 88.195 kb on + strand, within Ac3H11_3187at 88.195 kb on + strand, within Ac3H11_3187at 88.195 kb on + strand, within Ac3H11_3187at 88.195 kb on + strand, within Ac3H11_3187at 88.195 kb on + strand, within Ac3H11_3187at 88.195 kb on + strand, within Ac3H11_3187at 88.196 kb on - strand, within Ac3H11_3187at 88.196 kb on - strand, within Ac3H11_3187at 88.196 kb on - strand, within Ac3H11_3187at 88.196 kb on - strand, within Ac3H11_3187at 88.196 kb on - strand, within Ac3H11_3187at 88.196 kb on - strand, within Ac3H11_3187at 88.196 kb on - strand, within Ac3H11_3187at 88.246 kb on + strand, within Ac3H11_3187at 88.247 kb on - strand, within Ac3H11_3187at 88.247 kb on - strand, within Ac3H11_3187at 88.247 kb on - strand, within Ac3H11_3187at 88.552 kb on + strand, within Ac3H11_3187at 88.552 kb on + strand, within Ac3H11_3187at 88.552 kb on + strand, within Ac3H11_3187at 88.553 kb on - strand, within Ac3H11_3187at 88.553 kb on - strand, within Ac3H11_3187at 88.553 kb on - strand, within Ac3H11_3187at 88.657 kb on + strand, within Ac3H11_3187at 88.657 kb on + strand, within Ac3H11_3187at 88.658 kb on - strand, within Ac3H11_3187

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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86,777 + Ac3H11_3185 0.23 -0.2
86,778 - Ac3H11_3185 0.23 -0.2
86,900 + Ac3H11_3185 0.34 -0.5
86,901 - Ac3H11_3185 0.34 -1.4
86,901 - Ac3H11_3185 0.34 +1.4
86,901 - Ac3H11_3185 0.34 +0.5
86,901 - Ac3H11_3185 0.34 -0.0
86,901 - Ac3H11_3185 0.34 +0.5
86,901 - Ac3H11_3185 0.34 -0.3
86,901 - Ac3H11_3185 0.34 +0.2
86,901 - Ac3H11_3185 0.34 -1.2
86,903 + Ac3H11_3185 0.34 +1.0
86,903 + Ac3H11_3185 0.34 +0.4
86,942 + Ac3H11_3185 0.38 +0.5
86,943 - Ac3H11_3185 0.38 -0.8
86,943 - Ac3H11_3185 0.38 +2.5
86,943 - Ac3H11_3185 0.38 +3.5
87,043 + Ac3H11_3185 0.47 -0.5
87,043 + Ac3H11_3185 0.47 -0.8
87,044 - Ac3H11_3185 0.47 +2.4
87,134 + Ac3H11_3185 0.55 +1.1
87,135 - Ac3H11_3185 0.55 +0.8
87,227 + Ac3H11_3185 0.63 +3.4
87,227 + Ac3H11_3185 0.63 -1.1
87,227 + Ac3H11_3185 0.63 +0.7
87,227 + Ac3H11_3185 0.63 +1.0
87,227 + Ac3H11_3185 0.63 +1.0
87,227 + Ac3H11_3185 0.63 +0.6
87,228 - Ac3H11_3185 0.63 +0.5
87,228 - Ac3H11_3185 0.63 -0.6
87,228 - Ac3H11_3185 0.63 -0.1
87,344 + Ac3H11_3185 0.73 +1.5
87,344 + Ac3H11_3185 0.73 +1.0
87,344 + Ac3H11_3185 0.73 -1.5
87,344 + Ac3H11_3185 0.73 -0.4
87,344 + Ac3H11_3185 0.73 -1.8
87,345 - Ac3H11_3185 0.73 +0.7
87,345 - Ac3H11_3185 0.73 -0.1
87,345 - Ac3H11_3185 0.73 +1.8
87,345 - Ac3H11_3185 0.73 +0.3
87,345 - Ac3H11_3185 0.73 +0.6
87,431 + Ac3H11_3185 0.81 +1.0
87,432 - Ac3H11_3185 0.81 -0.4
87,432 - Ac3H11_3185 0.81 -0.8
87,503 + Ac3H11_3185 0.87 +0.4
87,504 - Ac3H11_3185 0.87 -0.3
87,632 - +3.3
87,632 - -1.2
87,854 - -0.5
87,854 - +0.5
87,931 + -1.5
87,932 - +0.4
87,932 - +2.0
88,120 + Ac3H11_3187 0.23 +0.0
88,120 + Ac3H11_3187 0.23 -1.8
88,120 + Ac3H11_3187 0.23 +0.4
88,120 + Ac3H11_3187 0.23 -0.1
88,121 - Ac3H11_3187 0.23 +0.2
88,121 - Ac3H11_3187 0.23 +0.8
88,153 + Ac3H11_3187 0.27 +0.4
88,195 + Ac3H11_3187 0.31 +0.3
88,195 + Ac3H11_3187 0.31 -0.8
88,195 + Ac3H11_3187 0.31 +1.5
88,195 + Ac3H11_3187 0.31 -0.6
88,195 + Ac3H11_3187 0.31 -0.2
88,195 + Ac3H11_3187 0.31 +0.5
88,195 + Ac3H11_3187 0.31 +0.6
88,196 - Ac3H11_3187 0.31 +0.3
88,196 - Ac3H11_3187 0.31 +1.0
88,196 - Ac3H11_3187 0.31 +0.4
88,196 - Ac3H11_3187 0.31 -0.0
88,196 - Ac3H11_3187 0.31 -1.4
88,196 - Ac3H11_3187 0.31 -0.1
88,196 - Ac3H11_3187 0.31 -2.2
88,246 + Ac3H11_3187 0.36 +0.0
88,247 - Ac3H11_3187 0.36 +1.0
88,247 - Ac3H11_3187 0.36 -0.6
88,247 - Ac3H11_3187 0.36 +0.1
88,552 + Ac3H11_3187 0.68 -0.5
88,552 + Ac3H11_3187 0.68 +0.4
88,552 + Ac3H11_3187 0.68 +1.1
88,553 - Ac3H11_3187 0.68 -1.0
88,553 - Ac3H11_3187 0.68 -0.7
88,553 - Ac3H11_3187 0.68 -0.5
88,657 + Ac3H11_3187 0.79 +1.0
88,657 + Ac3H11_3187 0.79 -0.2
88,658 - Ac3H11_3187 0.79 +0.4

Or see this region's nucleotide sequence