Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2711 and Ac3H11_2712 are separated by 864 nucleotides Ac3H11_2712 and Ac3H11_2713 are separated by 736 nucleotides
Ac3H11_2711 - 2,3-dihydroxybiphenyl 1,2-dioxygenase (EC 1.13.11.39), at 1,010,818 to 1,011,579
_2711
Ac3H11_2712 - Transcriptional regulator, IclR family, at 1,012,444 to 1,013,280
_2712
Ac3H11_2713 - Tricarboxylate transport protein TctC, at 1,014,017 to 1,014,253
_2713
Position (kb)
1012
1013
1014 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1011.572 kb on + strand at 1011.572 kb on + strand at 1011.572 kb on + strand at 1011.572 kb on + strand at 1011.572 kb on + strand at 1011.572 kb on + strand at 1011.573 kb on - strand at 1011.573 kb on - strand at 1011.638 kb on + strand at 1011.638 kb on + strand at 1011.638 kb on + strand at 1011.639 kb on - strand at 1011.639 kb on - strand at 1011.701 kb on + strand at 1011.750 kb on + strand at 1011.750 kb on + strand at 1011.750 kb on + strand at 1011.750 kb on + strand at 1011.751 kb on - strand at 1011.751 kb on - strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.754 kb on + strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.755 kb on - strand at 1011.786 kb on + strand at 1011.987 kb on + strand at 1011.987 kb on + strand at 1011.987 kb on + strand at 1011.988 kb on - strand at 1011.988 kb on - strand at 1011.988 kb on - strand at 1011.988 kb on - strand at 1011.988 kb on - strand at 1011.988 kb on - strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.989 kb on + strand at 1011.990 kb on - strand at 1011.990 kb on - strand at 1011.990 kb on - strand at 1011.990 kb on - strand at 1011.990 kb on - strand at 1011.990 kb on - strand at 1011.990 kb on - strand at 1012.014 kb on + strand at 1012.015 kb on - strand at 1012.015 kb on - strand at 1012.015 kb on - strand at 1012.015 kb on - strand at 1012.015 kb on - strand at 1012.047 kb on + strand at 1012.105 kb on + strand at 1012.160 kb on + strand at 1012.161 kb on - strand at 1012.270 kb on + strand at 1012.305 kb on + strand at 1012.305 kb on + strand at 1012.305 kb on + strand at 1012.305 kb on + strand at 1012.305 kb on + strand at 1012.305 kb on + strand at 1012.305 kb on + strand at 1012.306 kb on - strand at 1012.306 kb on - strand at 1012.306 kb on - strand at 1012.306 kb on - strand at 1012.306 kb on - strand at 1012.314 kb on + strand at 1012.315 kb on - strand at 1012.315 kb on - strand at 1012.315 kb on - strand at 1012.345 kb on + strand at 1012.345 kb on + strand at 1012.345 kb on + strand at 1012.346 kb on - strand at 1012.616 kb on + strand, within Ac3H11_2712 at 1012.616 kb on + strand, within Ac3H11_2712 at 1012.616 kb on + strand, within Ac3H11_2712 at 1012.617 kb on - strand, within Ac3H11_2712 at 1012.617 kb on - strand, within Ac3H11_2712 at 1012.617 kb on - strand, within Ac3H11_2712 at 1012.617 kb on - strand, within Ac3H11_2712 at 1012.714 kb on + strand, within Ac3H11_2712 at 1012.714 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.906 kb on + strand, within Ac3H11_2712 at 1012.907 kb on - strand, within Ac3H11_2712 at 1012.907 kb on - strand, within Ac3H11_2712 at 1012.907 kb on - strand, within Ac3H11_2712 at 1012.907 kb on - strand, within Ac3H11_2712 at 1013.048 kb on - strand, within Ac3H11_2712 at 1013.066 kb on + strand, within Ac3H11_2712 at 1013.102 kb on - strand, within Ac3H11_2712 at 1013.164 kb on + strand, within Ac3H11_2712 at 1013.165 kb on - strand, within Ac3H11_2712 at 1013.213 kb on + strand at 1013.346 kb on + strand at 1013.563 kb on - strand at 1013.653 kb on - strand at 1013.833 kb on + strand at 1013.886 kb on + strand at 1013.887 kb on - strand at 1013.887 kb on - strand at 1013.887 kb on - strand at 1013.887 kb on - strand at 1013.887 kb on - strand at 1013.887 kb on - strand at 1013.887 kb on - strand at 1013.890 kb on + strand at 1013.891 kb on - strand at 1013.891 kb on - strand at 1013.891 kb on - strand at 1013.891 kb on - strand at 1014.158 kb on + strand, within Ac3H11_2713 at 1014.159 kb on - strand, within Ac3H11_2713
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 1,011,572 + -0.6 1,011,572 + +0.5 1,011,572 + +0.1 1,011,572 + +0.4 1,011,572 + +0.4 1,011,572 + -2.0 1,011,573 - -0.1 1,011,573 - -0.7 1,011,638 + +0.0 1,011,638 + -0.4 1,011,638 + -1.5 1,011,639 - +0.1 1,011,639 - -0.5 1,011,701 + -0.2 1,011,750 + -0.7 1,011,750 + -1.4 1,011,750 + +0.2 1,011,750 + -0.3 1,011,751 - +1.6 1,011,751 - -0.3 1,011,754 + -0.9 1,011,754 + -0.7 1,011,754 + -0.8 1,011,754 + +1.3 1,011,754 + +0.8 1,011,754 + +2.8 1,011,754 + +2.3 1,011,754 + +0.5 1,011,754 + -0.2 1,011,754 + +0.2 1,011,754 + -0.5 1,011,754 + +0.3 1,011,754 + -0.8 1,011,754 + -0.8 1,011,754 + +0.3 1,011,755 - -2.9 1,011,755 - +0.5 1,011,755 - +0.0 1,011,755 - +0.7 1,011,755 - -0.4 1,011,755 - -0.4 1,011,755 - -1.2 1,011,755 - -2.3 1,011,755 - -0.0 1,011,755 - -1.1 1,011,755 - -0.4 1,011,786 + +0.8 1,011,987 + -0.7 1,011,987 + +0.6 1,011,987 + +0.5 1,011,988 - -0.7 1,011,988 - +0.6 1,011,988 - -0.2 1,011,988 - -0.2 1,011,988 - +1.1 1,011,988 - -0.2 1,011,989 + +1.8 1,011,989 + -0.2 1,011,989 + -1.2 1,011,989 + -1.0 1,011,989 + +0.6 1,011,989 + -0.6 1,011,989 + -0.9 1,011,989 + +0.3 1,011,989 + -0.6 1,011,990 - -0.9 1,011,990 - +0.1 1,011,990 - +0.1 1,011,990 - +0.2 1,011,990 - -0.7 1,011,990 - +1.0 1,011,990 - -0.8 1,012,014 + -1.0 1,012,015 - +1.2 1,012,015 - +0.1 1,012,015 - -0.2 1,012,015 - -0.8 1,012,015 - +2.1 1,012,047 + -0.1 1,012,105 + +0.3 1,012,160 + +0.3 1,012,161 - +0.7 1,012,270 + -0.9 1,012,305 + +3.1 1,012,305 + +0.2 1,012,305 + -3.0 1,012,305 + +0.6 1,012,305 + +0.8 1,012,305 + -1.7 1,012,305 + -2.5 1,012,306 - -0.8 1,012,306 - -0.2 1,012,306 - -0.3 1,012,306 - -1.0 1,012,306 - -0.9 1,012,314 + -1.1 1,012,315 - -2.1 1,012,315 - +1.2 1,012,315 - -1.0 1,012,345 + -0.7 1,012,345 + +0.2 1,012,345 + -0.8 1,012,346 - -0.0 1,012,616 + Ac3H11_2712 0.21 -1.7 1,012,616 + Ac3H11_2712 0.21 +0.6 1,012,616 + Ac3H11_2712 0.21 +0.8 1,012,617 - Ac3H11_2712 0.21 +0.5 1,012,617 - Ac3H11_2712 0.21 -0.2 1,012,617 - Ac3H11_2712 0.21 -0.6 1,012,617 - Ac3H11_2712 0.21 -0.3 1,012,714 + Ac3H11_2712 0.32 +0.6 1,012,714 + Ac3H11_2712 0.32 +1.7 1,012,906 + Ac3H11_2712 0.55 +0.2 1,012,906 + Ac3H11_2712 0.55 -0.8 1,012,906 + Ac3H11_2712 0.55 +1.0 1,012,906 + Ac3H11_2712 0.55 -1.1 1,012,906 + Ac3H11_2712 0.55 +1.3 1,012,906 + Ac3H11_2712 0.55 +1.1 1,012,906 + Ac3H11_2712 0.55 +0.8 1,012,906 + Ac3H11_2712 0.55 -0.2 1,012,907 - Ac3H11_2712 0.55 +0.3 1,012,907 - Ac3H11_2712 0.55 -0.1 1,012,907 - Ac3H11_2712 0.55 -3.1 1,012,907 - Ac3H11_2712 0.55 +1.8 1,013,048 - Ac3H11_2712 0.72 +0.6 1,013,066 + Ac3H11_2712 0.74 -0.6 1,013,102 - Ac3H11_2712 0.79 -1.0 1,013,164 + Ac3H11_2712 0.86 -2.0 1,013,165 - Ac3H11_2712 0.86 -1.2 1,013,213 + -0.2 1,013,346 + +0.6 1,013,563 - +0.1 1,013,653 - -0.4 1,013,833 + -0.1 1,013,886 + +0.4 1,013,887 - -2.3 1,013,887 - +0.6 1,013,887 - -2.0 1,013,887 - +1.2 1,013,887 - +1.4 1,013,887 - -1.5 1,013,887 - +0.0 1,013,890 + -1.9 1,013,891 - +1.6 1,013,891 - -1.1 1,013,891 - +0.6 1,013,891 - -0.7 1,014,158 + Ac3H11_2713 0.59 +1.6 1,014,159 - Ac3H11_2713 0.60 +0.8
Or see this region's nucleotide sequence