Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2712

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2711 and Ac3H11_2712 are separated by 864 nucleotidesAc3H11_2712 and Ac3H11_2713 are separated by 736 nucleotides Ac3H11_2711 - 2,3-dihydroxybiphenyl 1,2-dioxygenase (EC 1.13.11.39), at 1,010,818 to 1,011,579 _2711 Ac3H11_2712 - Transcriptional regulator, IclR family, at 1,012,444 to 1,013,280 _2712 Ac3H11_2713 - Tricarboxylate transport protein TctC, at 1,014,017 to 1,014,253 _2713 Position (kb) 1012 1013 1014Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1011.572 kb on + strandat 1011.572 kb on + strandat 1011.572 kb on + strandat 1011.572 kb on + strandat 1011.572 kb on + strandat 1011.572 kb on + strandat 1011.573 kb on - strandat 1011.573 kb on - strandat 1011.638 kb on + strandat 1011.638 kb on + strandat 1011.638 kb on + strandat 1011.639 kb on - strandat 1011.639 kb on - strandat 1011.701 kb on + strandat 1011.750 kb on + strandat 1011.750 kb on + strandat 1011.750 kb on + strandat 1011.750 kb on + strandat 1011.751 kb on - strandat 1011.751 kb on - strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.754 kb on + strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.755 kb on - strandat 1011.786 kb on + strandat 1011.987 kb on + strandat 1011.987 kb on + strandat 1011.987 kb on + strandat 1011.988 kb on - strandat 1011.988 kb on - strandat 1011.988 kb on - strandat 1011.988 kb on - strandat 1011.988 kb on - strandat 1011.988 kb on - strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.989 kb on + strandat 1011.990 kb on - strandat 1011.990 kb on - strandat 1011.990 kb on - strandat 1011.990 kb on - strandat 1011.990 kb on - strandat 1011.990 kb on - strandat 1011.990 kb on - strandat 1012.014 kb on + strandat 1012.015 kb on - strandat 1012.015 kb on - strandat 1012.015 kb on - strandat 1012.015 kb on - strandat 1012.015 kb on - strandat 1012.047 kb on + strandat 1012.105 kb on + strandat 1012.160 kb on + strandat 1012.161 kb on - strandat 1012.270 kb on + strandat 1012.305 kb on + strandat 1012.305 kb on + strandat 1012.305 kb on + strandat 1012.305 kb on + strandat 1012.305 kb on + strandat 1012.305 kb on + strandat 1012.305 kb on + strandat 1012.306 kb on - strandat 1012.306 kb on - strandat 1012.306 kb on - strandat 1012.306 kb on - strandat 1012.306 kb on - strandat 1012.314 kb on + strandat 1012.315 kb on - strandat 1012.315 kb on - strandat 1012.315 kb on - strandat 1012.345 kb on + strandat 1012.345 kb on + strandat 1012.345 kb on + strandat 1012.346 kb on - strandat 1012.616 kb on + strand, within Ac3H11_2712at 1012.616 kb on + strand, within Ac3H11_2712at 1012.616 kb on + strand, within Ac3H11_2712at 1012.617 kb on - strand, within Ac3H11_2712at 1012.617 kb on - strand, within Ac3H11_2712at 1012.617 kb on - strand, within Ac3H11_2712at 1012.617 kb on - strand, within Ac3H11_2712at 1012.714 kb on + strand, within Ac3H11_2712at 1012.714 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.906 kb on + strand, within Ac3H11_2712at 1012.907 kb on - strand, within Ac3H11_2712at 1012.907 kb on - strand, within Ac3H11_2712at 1012.907 kb on - strand, within Ac3H11_2712at 1012.907 kb on - strand, within Ac3H11_2712at 1013.048 kb on - strand, within Ac3H11_2712at 1013.066 kb on + strand, within Ac3H11_2712at 1013.102 kb on - strand, within Ac3H11_2712at 1013.164 kb on + strand, within Ac3H11_2712at 1013.165 kb on - strand, within Ac3H11_2712at 1013.213 kb on + strandat 1013.346 kb on + strandat 1013.563 kb on - strandat 1013.653 kb on - strandat 1013.833 kb on + strandat 1013.886 kb on + strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.887 kb on - strandat 1013.890 kb on + strandat 1013.891 kb on - strandat 1013.891 kb on - strandat 1013.891 kb on - strandat 1013.891 kb on - strandat 1014.158 kb on + strand, within Ac3H11_2713at 1014.159 kb on - strand, within Ac3H11_2713

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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1,011,572 + -0.6
1,011,572 + +0.5
1,011,572 + +0.1
1,011,572 + +0.4
1,011,572 + +0.4
1,011,572 + -2.0
1,011,573 - -0.1
1,011,573 - -0.7
1,011,638 + +0.0
1,011,638 + -0.4
1,011,638 + -1.5
1,011,639 - +0.1
1,011,639 - -0.5
1,011,701 + -0.2
1,011,750 + -0.7
1,011,750 + -1.4
1,011,750 + +0.2
1,011,750 + -0.3
1,011,751 - +1.6
1,011,751 - -0.3
1,011,754 + -0.9
1,011,754 + -0.7
1,011,754 + -0.8
1,011,754 + +1.3
1,011,754 + +0.8
1,011,754 + +2.8
1,011,754 + +2.3
1,011,754 + +0.5
1,011,754 + -0.2
1,011,754 + +0.2
1,011,754 + -0.5
1,011,754 + +0.3
1,011,754 + -0.8
1,011,754 + -0.8
1,011,754 + +0.3
1,011,755 - -2.9
1,011,755 - +0.5
1,011,755 - +0.0
1,011,755 - +0.7
1,011,755 - -0.4
1,011,755 - -0.4
1,011,755 - -1.2
1,011,755 - -2.3
1,011,755 - -0.0
1,011,755 - -1.1
1,011,755 - -0.4
1,011,786 + +0.8
1,011,987 + -0.7
1,011,987 + +0.6
1,011,987 + +0.5
1,011,988 - -0.7
1,011,988 - +0.6
1,011,988 - -0.2
1,011,988 - -0.2
1,011,988 - +1.1
1,011,988 - -0.2
1,011,989 + +1.8
1,011,989 + -0.2
1,011,989 + -1.2
1,011,989 + -1.0
1,011,989 + +0.6
1,011,989 + -0.6
1,011,989 + -0.9
1,011,989 + +0.3
1,011,989 + -0.6
1,011,990 - -0.9
1,011,990 - +0.1
1,011,990 - +0.1
1,011,990 - +0.2
1,011,990 - -0.7
1,011,990 - +1.0
1,011,990 - -0.8
1,012,014 + -1.0
1,012,015 - +1.2
1,012,015 - +0.1
1,012,015 - -0.2
1,012,015 - -0.8
1,012,015 - +2.1
1,012,047 + -0.1
1,012,105 + +0.3
1,012,160 + +0.3
1,012,161 - +0.7
1,012,270 + -0.9
1,012,305 + +3.1
1,012,305 + +0.2
1,012,305 + -3.0
1,012,305 + +0.6
1,012,305 + +0.8
1,012,305 + -1.7
1,012,305 + -2.5
1,012,306 - -0.8
1,012,306 - -0.2
1,012,306 - -0.3
1,012,306 - -1.0
1,012,306 - -0.9
1,012,314 + -1.1
1,012,315 - -2.1
1,012,315 - +1.2
1,012,315 - -1.0
1,012,345 + -0.7
1,012,345 + +0.2
1,012,345 + -0.8
1,012,346 - -0.0
1,012,616 + Ac3H11_2712 0.21 -1.7
1,012,616 + Ac3H11_2712 0.21 +0.6
1,012,616 + Ac3H11_2712 0.21 +0.8
1,012,617 - Ac3H11_2712 0.21 +0.5
1,012,617 - Ac3H11_2712 0.21 -0.2
1,012,617 - Ac3H11_2712 0.21 -0.6
1,012,617 - Ac3H11_2712 0.21 -0.3
1,012,714 + Ac3H11_2712 0.32 +0.6
1,012,714 + Ac3H11_2712 0.32 +1.7
1,012,906 + Ac3H11_2712 0.55 +0.2
1,012,906 + Ac3H11_2712 0.55 -0.8
1,012,906 + Ac3H11_2712 0.55 +1.0
1,012,906 + Ac3H11_2712 0.55 -1.1
1,012,906 + Ac3H11_2712 0.55 +1.3
1,012,906 + Ac3H11_2712 0.55 +1.1
1,012,906 + Ac3H11_2712 0.55 +0.8
1,012,906 + Ac3H11_2712 0.55 -0.2
1,012,907 - Ac3H11_2712 0.55 +0.3
1,012,907 - Ac3H11_2712 0.55 -0.1
1,012,907 - Ac3H11_2712 0.55 -3.1
1,012,907 - Ac3H11_2712 0.55 +1.8
1,013,048 - Ac3H11_2712 0.72 +0.6
1,013,066 + Ac3H11_2712 0.74 -0.6
1,013,102 - Ac3H11_2712 0.79 -1.0
1,013,164 + Ac3H11_2712 0.86 -2.0
1,013,165 - Ac3H11_2712 0.86 -1.2
1,013,213 + -0.2
1,013,346 + +0.6
1,013,563 - +0.1
1,013,653 - -0.4
1,013,833 + -0.1
1,013,886 + +0.4
1,013,887 - -2.3
1,013,887 - +0.6
1,013,887 - -2.0
1,013,887 - +1.2
1,013,887 - +1.4
1,013,887 - -1.5
1,013,887 - +0.0
1,013,890 + -1.9
1,013,891 - +1.6
1,013,891 - -1.1
1,013,891 - +0.6
1,013,891 - -0.7
1,014,158 + Ac3H11_2713 0.59 +1.6
1,014,159 - Ac3H11_2713 0.60 +0.8

Or see this region's nucleotide sequence