Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_237

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_236 and Ac3H11_237 are separated by 5 nucleotidesAc3H11_237 and Ac3H11_238 are separated by 179 nucleotides Ac3H11_236 - FIG138928: iron-regulated membrane protein, at 50,569 to 52,428 _236 Ac3H11_237 - FIG016502: iron uptake protein, at 52,434 to 52,766 _237 Ac3H11_238 - Ferrichrome-iron receptor, at 52,946 to 55,129 _238 Position (kb) 52 53Strain fitness (log2 ratio) -1 0 1at 51.643 kb on + strand, within Ac3H11_236at 51.739 kb on + strand, within Ac3H11_236at 51.740 kb on - strand, within Ac3H11_236at 51.740 kb on - strand, within Ac3H11_236at 52.000 kb on + strand, within Ac3H11_236at 52.000 kb on + strand, within Ac3H11_236at 52.000 kb on + strand, within Ac3H11_236at 52.000 kb on + strand, within Ac3H11_236at 52.001 kb on - strand, within Ac3H11_236at 52.001 kb on - strand, within Ac3H11_236at 52.001 kb on - strand, within Ac3H11_236at 52.001 kb on - strand, within Ac3H11_236at 53.375 kb on + strand, within Ac3H11_238at 53.406 kb on + strand, within Ac3H11_238at 53.407 kb on - strand, within Ac3H11_238at 53.535 kb on - strand, within Ac3H11_238at 53.535 kb on - strand, within Ac3H11_238at 53.535 kb on - strand, within Ac3H11_238at 53.714 kb on + strand, within Ac3H11_238at 53.715 kb on - strand, within Ac3H11_238at 53.715 kb on - strand, within Ac3H11_238

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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51,643 + Ac3H11_236 0.58 -0.2
51,739 + Ac3H11_236 0.63 +0.5
51,740 - Ac3H11_236 0.63 -1.4
51,740 - Ac3H11_236 0.63 +0.4
52,000 + Ac3H11_236 0.77 -1.1
52,000 + Ac3H11_236 0.77 -0.4
52,000 + Ac3H11_236 0.77 +0.4
52,000 + Ac3H11_236 0.77 -1.1
52,001 - Ac3H11_236 0.77 -0.9
52,001 - Ac3H11_236 0.77 +0.3
52,001 - Ac3H11_236 0.77 +0.4
52,001 - Ac3H11_236 0.77 +0.4
53,375 + Ac3H11_238 0.20 +0.4
53,406 + Ac3H11_238 0.21 +0.1
53,407 - Ac3H11_238 0.21 +0.1
53,535 - Ac3H11_238 0.27 +0.1
53,535 - Ac3H11_238 0.27 +0.1
53,535 - Ac3H11_238 0.27 -0.7
53,714 + Ac3H11_238 0.35 -0.9
53,715 - Ac3H11_238 0.35 -0.2
53,715 - Ac3H11_238 0.35 +1.0

Or see this region's nucleotide sequence