Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2083 and Ac3H11_2084 are separated by 234 nucleotides Ac3H11_2084 and Ac3H11_2085 are separated by 133 nucleotides Ac3H11_2085 and Ac3H11_2086 are separated by 292 nucleotides
Ac3H11_2083 - 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14), at 309,331 to 309,960
_2083
Ac3H11_2084 - protein of unknown function DUF805, at 310,195 to 310,497
_2084
Ac3H11_2085 - hypothetical protein, at 310,631 to 311,494
_2085
Ac3H11_2086 - Heat shock protein 60 family chaperone GroEL, at 311,787 to 313,439
_2086
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.808 kb on - strand at 309.829 kb on + strand, within Ac3H11_2083 at 309.829 kb on + strand, within Ac3H11_2083 at 309.981 kb on + strand at 310.016 kb on - strand at 310.028 kb on - strand at 310.127 kb on - strand at 310.195 kb on - strand at 310.234 kb on + strand, within Ac3H11_2084 at 310.234 kb on + strand, within Ac3H11_2084 at 310.336 kb on + strand, within Ac3H11_2084 at 310.337 kb on - strand, within Ac3H11_2084 at 310.337 kb on - strand, within Ac3H11_2084 at 310.337 kb on - strand, within Ac3H11_2084 at 310.465 kb on + strand, within Ac3H11_2084 at 310.465 kb on + strand, within Ac3H11_2084 at 310.465 kb on + strand, within Ac3H11_2084 at 310.465 kb on + strand, within Ac3H11_2084 at 310.465 kb on + strand, within Ac3H11_2084 at 310.466 kb on - strand, within Ac3H11_2084 at 310.466 kb on - strand, within Ac3H11_2084 at 310.466 kb on - strand, within Ac3H11_2084 at 310.668 kb on + strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.669 kb on - strand at 310.713 kb on + strand at 310.713 kb on + strand at 310.713 kb on + strand at 310.713 kb on + strand at 310.713 kb on + strand at 310.713 kb on + strand at 310.714 kb on - strand at 310.714 kb on - strand at 310.714 kb on - strand at 310.714 kb on - strand at 310.759 kb on - strand, within Ac3H11_2085 at 310.918 kb on - strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.969 kb on + strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.970 kb on - strand, within Ac3H11_2085 at 310.993 kb on + strand, within Ac3H11_2085 at 310.993 kb on + strand, within Ac3H11_2085 at 310.993 kb on + strand, within Ac3H11_2085 at 310.993 kb on + strand, within Ac3H11_2085 at 310.994 kb on - strand, within Ac3H11_2085 at 310.994 kb on - strand, within Ac3H11_2085 at 310.994 kb on - strand, within Ac3H11_2085 at 310.994 kb on - strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.115 kb on + strand, within Ac3H11_2085 at 311.116 kb on - strand, within Ac3H11_2085 at 311.116 kb on - strand, within Ac3H11_2085 at 311.116 kb on - strand, within Ac3H11_2085 at 311.116 kb on - strand, within Ac3H11_2085 at 311.116 kb on - strand, within Ac3H11_2085 at 311.116 kb on - strand, within Ac3H11_2085 at 311.596 kb on + strand at 311.596 kb on + strand at 311.597 kb on - strand at 311.597 kb on - strand at 311.597 kb on - strand at 311.597 kb on - strand at 311.598 kb on + strand at 311.598 kb on + strand at 311.599 kb on - strand at 311.636 kb on + strand at 311.646 kb on + strand at 311.647 kb on - strand at 311.647 kb on - strand at 311.647 kb on - strand at 311.647 kb on - strand at 311.647 kb on - strand at 311.647 kb on - strand at 311.659 kb on + strand at 311.660 kb on - strand at 311.660 kb on - strand at 311.660 kb on - strand at 311.684 kb on - strand at 311.684 kb on - strand at 311.684 kb on - strand at 311.685 kb on + strand at 311.685 kb on + strand at 311.685 kb on + strand at 311.685 kb on + strand at 311.685 kb on + strand at 311.685 kb on + strand at 311.686 kb on - strand at 311.686 kb on - strand at 311.686 kb on - strand at 311.686 kb on - strand at 311.686 kb on - strand at 311.686 kb on - strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.788 kb on + strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand at 311.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 309,808 - -0.3 309,829 + Ac3H11_2083 0.79 +1.1 309,829 + Ac3H11_2083 0.79 -1.9 309,981 + -0.5 310,016 - +0.5 310,028 - -0.2 310,127 - -0.1 310,195 - +0.1 310,234 + Ac3H11_2084 0.13 +0.7 310,234 + Ac3H11_2084 0.13 +0.4 310,336 + Ac3H11_2084 0.47 +0.6 310,337 - Ac3H11_2084 0.47 +2.7 310,337 - Ac3H11_2084 0.47 -0.8 310,337 - Ac3H11_2084 0.47 -0.5 310,465 + Ac3H11_2084 0.89 +0.1 310,465 + Ac3H11_2084 0.89 -0.2 310,465 + Ac3H11_2084 0.89 +0.1 310,465 + Ac3H11_2084 0.89 -1.0 310,465 + Ac3H11_2084 0.89 +0.1 310,466 - Ac3H11_2084 0.89 +1.0 310,466 - Ac3H11_2084 0.89 +0.8 310,466 - Ac3H11_2084 0.89 +0.1 310,668 + +0.3 310,669 - -0.4 310,669 - -2.2 310,669 - +0.1 310,713 + -1.0 310,713 + +0.1 310,713 + -0.7 310,713 + -0.8 310,713 + -0.0 310,713 + -1.7 310,714 - -1.6 310,714 - +2.8 310,714 - +3.4 310,714 - -0.4 310,759 - Ac3H11_2085 0.15 +2.1 310,918 - Ac3H11_2085 0.33 -0.3 310,969 + Ac3H11_2085 0.39 -2.4 310,969 + Ac3H11_2085 0.39 +1.7 310,969 + Ac3H11_2085 0.39 +0.4 310,969 + Ac3H11_2085 0.39 +1.1 310,969 + Ac3H11_2085 0.39 +1.2 310,969 + Ac3H11_2085 0.39 +0.4 310,969 + Ac3H11_2085 0.39 +0.5 310,969 + Ac3H11_2085 0.39 -0.6 310,969 + Ac3H11_2085 0.39 +0.7 310,969 + Ac3H11_2085 0.39 -2.0 310,969 + Ac3H11_2085 0.39 +0.8 310,969 + Ac3H11_2085 0.39 -1.4 310,969 + Ac3H11_2085 0.39 +2.1 310,969 + Ac3H11_2085 0.39 +0.5 310,969 + Ac3H11_2085 0.39 +0.1 310,969 + Ac3H11_2085 0.39 -0.6 310,969 + Ac3H11_2085 0.39 -1.1 310,969 + Ac3H11_2085 0.39 +0.1 310,969 + Ac3H11_2085 0.39 +0.3 310,969 + Ac3H11_2085 0.39 -0.8 310,969 + Ac3H11_2085 0.39 +0.2 310,970 - Ac3H11_2085 0.39 -0.0 310,970 - Ac3H11_2085 0.39 +1.1 310,970 - Ac3H11_2085 0.39 -1.1 310,970 - Ac3H11_2085 0.39 +0.1 310,970 - Ac3H11_2085 0.39 -0.4 310,970 - Ac3H11_2085 0.39 +0.3 310,970 - Ac3H11_2085 0.39 +0.4 310,970 - Ac3H11_2085 0.39 -0.2 310,970 - Ac3H11_2085 0.39 -0.8 310,970 - Ac3H11_2085 0.39 +0.0 310,970 - Ac3H11_2085 0.39 -0.5 310,970 - Ac3H11_2085 0.39 +0.0 310,970 - Ac3H11_2085 0.39 +0.6 310,970 - Ac3H11_2085 0.39 -1.4 310,970 - Ac3H11_2085 0.39 -0.2 310,970 - Ac3H11_2085 0.39 -0.1 310,970 - Ac3H11_2085 0.39 -0.9 310,993 + Ac3H11_2085 0.42 +0.1 310,993 + Ac3H11_2085 0.42 -1.3 310,993 + Ac3H11_2085 0.42 -1.3 310,993 + Ac3H11_2085 0.42 +1.2 310,994 - Ac3H11_2085 0.42 -0.0 310,994 - Ac3H11_2085 0.42 -0.3 310,994 - Ac3H11_2085 0.42 -1.3 310,994 - Ac3H11_2085 0.42 -0.6 311,115 + Ac3H11_2085 0.56 +0.4 311,115 + Ac3H11_2085 0.56 -2.0 311,115 + Ac3H11_2085 0.56 +0.3 311,115 + Ac3H11_2085 0.56 -0.6 311,115 + Ac3H11_2085 0.56 -0.4 311,115 + Ac3H11_2085 0.56 +0.1 311,115 + Ac3H11_2085 0.56 -0.2 311,115 + Ac3H11_2085 0.56 -1.4 311,116 - Ac3H11_2085 0.56 -0.1 311,116 - Ac3H11_2085 0.56 +1.0 311,116 - Ac3H11_2085 0.56 +0.8 311,116 - Ac3H11_2085 0.56 -0.6 311,116 - Ac3H11_2085 0.56 +0.6 311,116 - Ac3H11_2085 0.56 -0.4 311,596 + -0.5 311,596 + -1.2 311,597 - -0.2 311,597 - +0.1 311,597 - -1.3 311,597 - -1.1 311,598 + -0.1 311,598 + +1.0 311,599 - +1.3 311,636 + +1.0 311,646 + +0.4 311,647 - +0.3 311,647 - +0.0 311,647 - -0.7 311,647 - -0.6 311,647 - -0.5 311,647 - +1.1 311,659 + -0.3 311,660 - +0.6 311,660 - -0.3 311,660 - +0.6 311,684 - +0.6 311,684 - +0.4 311,684 - +0.5 311,685 + +1.7 311,685 + +1.1 311,685 + -0.2 311,685 + -0.7 311,685 + +2.1 311,685 + +3.1 311,686 - -0.2 311,686 - -2.6 311,686 - +0.4 311,686 - +0.5 311,686 - -0.5 311,686 - +0.1 311,788 + -1.7 311,788 + +0.2 311,788 + +1.0 311,788 + -0.9 311,788 + +1.3 311,788 + +0.2 311,788 + +0.6 311,788 + -1.3 311,788 + -0.7 311,788 + -2.8 311,788 + -0.9 311,789 - -0.6 311,789 - -0.5 311,789 - -0.1 311,789 - -1.2 311,789 - -1.5 311,789 - +1.1 311,789 - -0.4 311,789 - +1.8 311,789 - -0.6 311,789 - -0.0 311,789 - +0.1 311,789 - -0.3 311,789 - -0.1
Or see this region's nucleotide sequence