Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_179

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_178 and Ac3H11_179 are separated by 184 nucleotidesAc3H11_179 and Ac3H11_180 are separated by 196 nucleotidesAc3H11_180 and Ac3H11_181 are separated by 138 nucleotides Ac3H11_178 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 66,255 to 67,439 _178 Ac3H11_179 - Tricarboxylate transport protein TctC, at 67,624 to 68,607 _179 Ac3H11_180 - Universal stress protein family, at 68,804 to 69,241 _180 Ac3H11_181 - FIG00538743: hypothetical protein, at 69,380 to 70,156 _181 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 66.837 kb on + strand, within Ac3H11_178at 66.838 kb on - strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.278 kb on - strand, within Ac3H11_178at 67.384 kb on + strandat 67.385 kb on - strandat 67.442 kb on + strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.711 kb on + strandat 67.945 kb on + strand, within Ac3H11_179at 67.945 kb on + strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.186 kb on - strand, within Ac3H11_179at 68.390 kb on - strand, within Ac3H11_179at 68.557 kb on + strandat 68.557 kb on + strandat 68.557 kb on + strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.733 kb on - strandat 68.733 kb on - strandat 69.069 kb on + strand, within Ac3H11_180at 69.069 kb on + strand, within Ac3H11_180at 69.069 kb on + strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.084 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.254 kb on + strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.277 kb on + strandat 69.277 kb on + strandat 69.278 kb on - strandat 69.278 kb on - strandat 69.278 kb on - strandat 69.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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66,837 + Ac3H11_178 0.49 -1.6
66,838 - Ac3H11_178 0.49 +0.5
66,894 + Ac3H11_178 0.54 -1.0
66,894 + Ac3H11_178 0.54 -0.4
66,895 - Ac3H11_178 0.54 -0.0
66,895 - Ac3H11_178 0.54 -1.0
66,895 - Ac3H11_178 0.54 +0.5
66,895 - Ac3H11_178 0.54 +0.8
67,119 + Ac3H11_178 0.73 -0.4
67,119 + Ac3H11_178 0.73 +0.1
67,119 + Ac3H11_178 0.73 +0.1
67,119 + Ac3H11_178 0.73 +2.0
67,119 + Ac3H11_178 0.73 -1.5
67,119 + Ac3H11_178 0.73 +1.9
67,119 + Ac3H11_178 0.73 -1.6
67,120 - Ac3H11_178 0.73 -0.1
67,120 - Ac3H11_178 0.73 -1.7
67,120 - Ac3H11_178 0.73 +1.1
67,120 - Ac3H11_178 0.73 -0.5
67,278 - Ac3H11_178 0.86 +0.7
67,384 + +1.1
67,385 - -0.4
67,442 + +0.1
67,443 - -1.7
67,443 - -2.6
67,443 - -0.9
67,443 - +0.0
67,711 + -0.4
67,945 + Ac3H11_179 0.33 -1.7
67,945 + Ac3H11_179 0.33 +0.2
67,946 - Ac3H11_179 0.33 +0.1
67,946 - Ac3H11_179 0.33 -0.9
67,946 - Ac3H11_179 0.33 -0.3
67,946 - Ac3H11_179 0.33 +0.1
68,041 + Ac3H11_179 0.42 +0.4
68,041 + Ac3H11_179 0.42 +0.1
68,041 + Ac3H11_179 0.42 +0.3
68,042 - Ac3H11_179 0.42 +0.4
68,042 - Ac3H11_179 0.42 +0.5
68,042 - Ac3H11_179 0.42 +1.4
68,042 - Ac3H11_179 0.42 +0.7
68,098 + Ac3H11_179 0.48 -1.9
68,098 + Ac3H11_179 0.48 -1.4
68,098 + Ac3H11_179 0.48 -1.2
68,098 + Ac3H11_179 0.48 +0.2
68,098 + Ac3H11_179 0.48 +0.0
68,098 + Ac3H11_179 0.48 +0.7
68,098 + Ac3H11_179 0.48 -0.0
68,099 - Ac3H11_179 0.48 +0.8
68,099 - Ac3H11_179 0.48 -1.3
68,099 - Ac3H11_179 0.48 -0.7
68,099 - Ac3H11_179 0.48 +0.2
68,099 - Ac3H11_179 0.48 +1.0
68,099 - Ac3H11_179 0.48 -0.4
68,099 - Ac3H11_179 0.48 +0.1
68,099 - Ac3H11_179 0.48 -1.1
68,099 - Ac3H11_179 0.48 -0.3
68,099 - Ac3H11_179 0.48 +0.4
68,185 + Ac3H11_179 0.57 -0.5
68,185 + Ac3H11_179 0.57 +0.5
68,186 - Ac3H11_179 0.57 +0.0
68,390 - Ac3H11_179 0.78 +1.6
68,557 + -0.6
68,557 + -0.7
68,557 + +0.2
68,558 - -1.3
68,558 - +1.1
68,558 - -1.3
68,558 - -1.6
68,733 - -1.3
68,733 - +0.1
69,069 + Ac3H11_180 0.61 +0.4
69,069 + Ac3H11_180 0.61 -0.6
69,069 + Ac3H11_180 0.61 +1.1
69,070 - Ac3H11_180 0.61 -0.4
69,070 - Ac3H11_180 0.61 +1.7
69,070 - Ac3H11_180 0.61 -0.3
69,070 - Ac3H11_180 0.61 -0.4
69,070 - Ac3H11_180 0.61 -0.2
69,070 - Ac3H11_180 0.61 +1.9
69,084 + Ac3H11_180 0.64 +0.1
69,132 + Ac3H11_180 0.75 -0.9
69,132 + Ac3H11_180 0.75 +0.1
69,132 + Ac3H11_180 0.75 +0.7
69,132 + Ac3H11_180 0.75 +0.7
69,132 + Ac3H11_180 0.75 -2.3
69,132 + Ac3H11_180 0.75 +0.0
69,133 - Ac3H11_180 0.75 +0.1
69,133 - Ac3H11_180 0.75 -1.3
69,133 - Ac3H11_180 0.75 +0.6
69,133 - Ac3H11_180 0.75 +0.9
69,133 - Ac3H11_180 0.75 +0.7
69,247 + +1.0
69,247 + +0.7
69,247 + -2.3
69,247 + -0.4
69,247 + -0.1
69,248 - -0.2
69,248 - -0.6
69,248 - -0.0
69,248 - +0.2
69,248 - -0.5
69,254 + +2.4
69,255 - +0.2
69,255 - -0.1
69,255 - -0.3
69,255 - +0.3
69,277 + -0.1
69,277 + -0.2
69,278 - +0.0
69,278 - -0.3
69,278 - -0.7
69,333 - -1.0

Or see this region's nucleotide sequence