Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1633

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1632 and Ac3H11_1633 are separated by 127 nucleotidesAc3H11_1633 and Ac3H11_1634 overlap by 4 nucleotides Ac3H11_1632 - Argininosuccinate lyase (EC 4.3.2.1), at 222,132 to 223,601 _1632 Ac3H11_1633 - Autolysin sensor kinase (EC 2.7.3.-), at 223,729 to 224,907 _1633 Ac3H11_1634 - Response regulator receiver:LytTr DNA-binding region, at 224,904 to 225,653 _1634 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.987 kb on + strand, within Ac3H11_1633at 223.987 kb on + strand, within Ac3H11_1633at 223.988 kb on - strand, within Ac3H11_1633at 223.988 kb on - strand, within Ac3H11_1633at 223.988 kb on - strand, within Ac3H11_1633at 224.027 kb on - strand, within Ac3H11_1633at 224.027 kb on - strand, within Ac3H11_1633at 224.737 kb on + strand, within Ac3H11_1633at 224.738 kb on - strand, within Ac3H11_1633at 224.738 kb on - strand, within Ac3H11_1633at 224.738 kb on - strand, within Ac3H11_1633at 224.884 kb on + strandat 225.210 kb on + strand, within Ac3H11_1634at 225.210 kb on + strand, within Ac3H11_1634at 225.211 kb on - strand, within Ac3H11_1634at 225.378 kb on + strand, within Ac3H11_1634at 225.378 kb on + strand, within Ac3H11_1634at 225.378 kb on + strand, within Ac3H11_1634at 225.378 kb on + strand, within Ac3H11_1634at 225.399 kb on + strand, within Ac3H11_1634at 225.400 kb on - strand, within Ac3H11_1634at 225.400 kb on - strand, within Ac3H11_1634at 225.429 kb on + strand, within Ac3H11_1634at 225.429 kb on + strand, within Ac3H11_1634at 225.429 kb on + strand, within Ac3H11_1634at 225.430 kb on - strand, within Ac3H11_1634at 225.430 kb on - strand, within Ac3H11_1634at 225.430 kb on - strand, within Ac3H11_1634at 225.430 kb on - strand, within Ac3H11_1634at 225.430 kb on - strand, within Ac3H11_1634at 225.543 kb on + strand, within Ac3H11_1634at 225.543 kb on + strand, within Ac3H11_1634at 225.543 kb on + strand, within Ac3H11_1634at 225.544 kb on - strand, within Ac3H11_1634at 225.864 kb on + strandat 225.865 kb on - strandat 225.877 kb on + strandat 225.877 kb on + strandat 225.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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223,849 + Ac3H11_1633 0.10 -0.6
223,849 + Ac3H11_1633 0.10 -0.0
223,849 + Ac3H11_1633 0.10 -0.5
223,849 + Ac3H11_1633 0.10 +1.9
223,849 + Ac3H11_1633 0.10 -1.7
223,849 + Ac3H11_1633 0.10 -0.1
223,849 + Ac3H11_1633 0.10 -0.7
223,849 + Ac3H11_1633 0.10 +0.7
223,849 + Ac3H11_1633 0.10 -2.2
223,849 + Ac3H11_1633 0.10 +0.6
223,849 + Ac3H11_1633 0.10 -0.4
223,849 + Ac3H11_1633 0.10 -0.3
223,849 + Ac3H11_1633 0.10 +0.1
223,849 + Ac3H11_1633 0.10 -0.2
223,849 + Ac3H11_1633 0.10 -1.4
223,849 + Ac3H11_1633 0.10 -1.1
223,849 + Ac3H11_1633 0.10 -0.2
223,850 - Ac3H11_1633 0.10 +1.0
223,850 - Ac3H11_1633 0.10 -0.6
223,850 - Ac3H11_1633 0.10 +0.5
223,850 - Ac3H11_1633 0.10 -2.2
223,850 - Ac3H11_1633 0.10 -0.3
223,987 + Ac3H11_1633 0.22 +0.9
223,987 + Ac3H11_1633 0.22 +0.8
223,988 - Ac3H11_1633 0.22 +0.1
223,988 - Ac3H11_1633 0.22 +0.0
223,988 - Ac3H11_1633 0.22 -0.6
224,027 - Ac3H11_1633 0.25 +0.3
224,027 - Ac3H11_1633 0.25 -1.4
224,737 + Ac3H11_1633 0.85 +1.3
224,738 - Ac3H11_1633 0.86 -0.5
224,738 - Ac3H11_1633 0.86 -0.4
224,738 - Ac3H11_1633 0.86 -0.3
224,884 + -1.1
225,210 + Ac3H11_1634 0.41 -0.6
225,210 + Ac3H11_1634 0.41 +0.0
225,211 - Ac3H11_1634 0.41 -0.3
225,378 + Ac3H11_1634 0.63 +0.1
225,378 + Ac3H11_1634 0.63 -0.4
225,378 + Ac3H11_1634 0.63 +0.0
225,378 + Ac3H11_1634 0.63 -2.6
225,399 + Ac3H11_1634 0.66 +0.9
225,400 - Ac3H11_1634 0.66 -1.8
225,400 - Ac3H11_1634 0.66 +0.2
225,429 + Ac3H11_1634 0.70 +0.2
225,429 + Ac3H11_1634 0.70 -1.8
225,429 + Ac3H11_1634 0.70 -2.0
225,430 - Ac3H11_1634 0.70 -1.8
225,430 - Ac3H11_1634 0.70 +0.0
225,430 - Ac3H11_1634 0.70 +1.8
225,430 - Ac3H11_1634 0.70 +0.4
225,430 - Ac3H11_1634 0.70 +0.0
225,543 + Ac3H11_1634 0.85 +1.5
225,543 + Ac3H11_1634 0.85 -0.2
225,543 + Ac3H11_1634 0.85 -0.3
225,544 - Ac3H11_1634 0.85 +0.9
225,864 + +1.0
225,865 - +0.2
225,877 + -1.0
225,877 + +0.3
225,877 + -0.8

Or see this region's nucleotide sequence