Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1632

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1631 and Ac3H11_1632 are separated by 177 nucleotidesAc3H11_1632 and Ac3H11_1633 are separated by 127 nucleotides Ac3H11_1631 - Tricarboxylate transport protein TctC, at 221,001 to 221,954 _1631 Ac3H11_1632 - Argininosuccinate lyase (EC 4.3.2.1), at 222,132 to 223,601 _1632 Ac3H11_1633 - Autolysin sensor kinase (EC 2.7.3.-), at 223,729 to 224,907 _1633 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.218 kb on + strand, within Ac3H11_1631at 221.218 kb on + strand, within Ac3H11_1631at 221.218 kb on + strand, within Ac3H11_1631at 221.219 kb on - strand, within Ac3H11_1631at 221.222 kb on - strand, within Ac3H11_1631at 221.222 kb on - strand, within Ac3H11_1631at 221.450 kb on - strand, within Ac3H11_1631at 221.552 kb on - strand, within Ac3H11_1631at 221.552 kb on - strand, within Ac3H11_1631at 221.552 kb on - strand, within Ac3H11_1631at 221.955 kb on + strandat 221.956 kb on - strandat 222.075 kb on - strandat 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.849 kb on + strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.850 kb on - strand, within Ac3H11_1633at 223.987 kb on + strand, within Ac3H11_1633at 223.987 kb on + strand, within Ac3H11_1633at 223.988 kb on - strand, within Ac3H11_1633at 223.988 kb on - strand, within Ac3H11_1633at 223.988 kb on - strand, within Ac3H11_1633at 224.027 kb on - strand, within Ac3H11_1633at 224.027 kb on - strand, within Ac3H11_1633

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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221,209 + Ac3H11_1631 0.22 -1.3
221,209 + Ac3H11_1631 0.22 -0.6
221,209 + Ac3H11_1631 0.22 -0.8
221,209 + Ac3H11_1631 0.22 +0.1
221,209 + Ac3H11_1631 0.22 -1.1
221,209 + Ac3H11_1631 0.22 -0.4
221,209 + Ac3H11_1631 0.22 +0.6
221,209 + Ac3H11_1631 0.22 +0.4
221,209 + Ac3H11_1631 0.22 -0.6
221,209 + Ac3H11_1631 0.22 +0.8
221,209 + Ac3H11_1631 0.22 +0.7
221,209 + Ac3H11_1631 0.22 -1.3
221,209 + Ac3H11_1631 0.22 -0.4
221,209 + Ac3H11_1631 0.22 +0.4
221,209 + Ac3H11_1631 0.22 +1.4
221,209 + Ac3H11_1631 0.22 +0.3
221,210 - Ac3H11_1631 0.22 +0.2
221,210 - Ac3H11_1631 0.22 -0.4
221,210 - Ac3H11_1631 0.22 -1.0
221,210 - Ac3H11_1631 0.22 -1.0
221,210 - Ac3H11_1631 0.22 -1.5
221,210 - Ac3H11_1631 0.22 -0.3
221,210 - Ac3H11_1631 0.22 -2.0
221,210 - Ac3H11_1631 0.22 -0.8
221,210 - Ac3H11_1631 0.22 +0.0
221,210 - Ac3H11_1631 0.22 -0.1
221,210 - Ac3H11_1631 0.22 -1.4
221,210 - Ac3H11_1631 0.22 -0.8
221,210 - Ac3H11_1631 0.22 -2.3
221,210 - Ac3H11_1631 0.22 -0.3
221,210 - Ac3H11_1631 0.22 -0.0
221,210 - Ac3H11_1631 0.22 +1.9
221,210 - Ac3H11_1631 0.22 -1.1
221,210 - Ac3H11_1631 0.22 +1.0
221,218 + Ac3H11_1631 0.23 -0.8
221,218 + Ac3H11_1631 0.23 +0.5
221,218 + Ac3H11_1631 0.23 -2.6
221,219 - Ac3H11_1631 0.23 -0.5
221,222 - Ac3H11_1631 0.23 +0.8
221,222 - Ac3H11_1631 0.23 +0.0
221,450 - Ac3H11_1631 0.47 +0.4
221,552 - Ac3H11_1631 0.58 +0.4
221,552 - Ac3H11_1631 0.58 -1.8
221,552 - Ac3H11_1631 0.58 +0.4
221,955 + +0.0
221,956 - +0.4
222,075 - +0.6
223,849 + Ac3H11_1633 0.10 -0.6
223,849 + Ac3H11_1633 0.10 -0.0
223,849 + Ac3H11_1633 0.10 -0.5
223,849 + Ac3H11_1633 0.10 +1.9
223,849 + Ac3H11_1633 0.10 -1.7
223,849 + Ac3H11_1633 0.10 -0.1
223,849 + Ac3H11_1633 0.10 -0.7
223,849 + Ac3H11_1633 0.10 +0.7
223,849 + Ac3H11_1633 0.10 -2.2
223,849 + Ac3H11_1633 0.10 +0.6
223,849 + Ac3H11_1633 0.10 -0.4
223,849 + Ac3H11_1633 0.10 -0.3
223,849 + Ac3H11_1633 0.10 +0.1
223,849 + Ac3H11_1633 0.10 -0.2
223,849 + Ac3H11_1633 0.10 -1.4
223,849 + Ac3H11_1633 0.10 -1.1
223,849 + Ac3H11_1633 0.10 -0.2
223,850 - Ac3H11_1633 0.10 +1.0
223,850 - Ac3H11_1633 0.10 -0.6
223,850 - Ac3H11_1633 0.10 +0.5
223,850 - Ac3H11_1633 0.10 -2.2
223,850 - Ac3H11_1633 0.10 -0.3
223,987 + Ac3H11_1633 0.22 +0.9
223,987 + Ac3H11_1633 0.22 +0.8
223,988 - Ac3H11_1633 0.22 +0.1
223,988 - Ac3H11_1633 0.22 +0.0
223,988 - Ac3H11_1633 0.22 -0.6
224,027 - Ac3H11_1633 0.25 +0.3
224,027 - Ac3H11_1633 0.25 -1.4

Or see this region's nucleotide sequence