Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1630

Experiment: phage 93.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1628 and Ac3H11_1629 are separated by 262 nucleotidesAc3H11_1629 and Ac3H11_1630 are separated by 67 nucleotidesAc3H11_1630 and Ac3H11_1631 are separated by 129 nucleotides Ac3H11_1628 - Large extracellular alpha-helical protein, at 212,509 to 218,493 _1628 Ac3H11_1629 - FIG00901576: hypothetical protein, at 218,756 to 219,364 _1629 Ac3H11_1630 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 219,432 to 220,871 _1630 Ac3H11_1631 - Tricarboxylate transport protein TctC, at 221,001 to 221,954 _1631 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 218.573 kb on - strandat 218.573 kb on - strandat 218.613 kb on + strandat 218.613 kb on + strandat 218.613 kb on + strandat 218.613 kb on + strandat 218.613 kb on + strandat 218.613 kb on + strandat 218.614 kb on - strandat 218.614 kb on - strandat 218.614 kb on - strandat 218.614 kb on - strandat 218.614 kb on - strandat 218.617 kb on + strandat 218.617 kb on + strandat 218.617 kb on + strandat 218.617 kb on + strandat 218.617 kb on + strandat 218.618 kb on - strandat 218.618 kb on - strandat 218.618 kb on - strandat 218.618 kb on - strandat 218.618 kb on - strandat 218.771 kb on + strandat 218.771 kb on + strandat 218.772 kb on - strandat 218.772 kb on - strandat 218.841 kb on - strand, within Ac3H11_1629at 218.897 kb on + strand, within Ac3H11_1629at 218.898 kb on - strand, within Ac3H11_1629at 219.362 kb on + strandat 219.363 kb on - strandat 219.363 kb on - strandat 219.388 kb on + strandat 219.389 kb on - strandat 219.389 kb on - strandat 219.392 kb on + strandat 219.393 kb on - strandat 219.393 kb on - strandat 219.508 kb on + strandat 219.509 kb on - strandat 220.030 kb on + strand, within Ac3H11_1630at 220.030 kb on + strand, within Ac3H11_1630at 220.031 kb on - strand, within Ac3H11_1630at 220.134 kb on + strand, within Ac3H11_1630at 220.135 kb on - strand, within Ac3H11_1630at 220.135 kb on - strand, within Ac3H11_1630at 220.135 kb on - strand, within Ac3H11_1630at 220.135 kb on - strand, within Ac3H11_1630at 220.135 kb on - strand, within Ac3H11_1630at 220.306 kb on + strand, within Ac3H11_1630at 220.474 kb on + strand, within Ac3H11_1630at 220.514 kb on - strand, within Ac3H11_1630at 220.949 kb on + strandat 220.949 kb on + strandat 220.949 kb on + strandat 220.949 kb on + strandat 220.950 kb on - strandat 220.950 kb on - strandat 220.950 kb on - strandat 220.950 kb on - strandat 220.950 kb on - strandat 220.969 kb on + strandat 220.969 kb on + strandat 220.970 kb on - strandat 221.002 kb on + strandat 221.002 kb on + strandat 221.002 kb on + strandat 221.003 kb on - strandat 221.003 kb on - strandat 221.003 kb on - strandat 221.003 kb on - strandat 221.053 kb on + strandat 221.053 kb on + strandat 221.053 kb on + strandat 221.053 kb on + strandat 221.053 kb on + strandat 221.053 kb on + strandat 221.053 kb on + strandat 221.054 kb on - strandat 221.054 kb on - strandat 221.054 kb on - strandat 221.054 kb on - strandat 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.209 kb on + strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.210 kb on - strand, within Ac3H11_1631at 221.218 kb on + strand, within Ac3H11_1631at 221.218 kb on + strand, within Ac3H11_1631at 221.218 kb on + strand, within Ac3H11_1631at 221.219 kb on - strand, within Ac3H11_1631at 221.222 kb on - strand, within Ac3H11_1631at 221.222 kb on - strand, within Ac3H11_1631at 221.450 kb on - strand, within Ac3H11_1631at 221.552 kb on - strand, within Ac3H11_1631at 221.552 kb on - strand, within Ac3H11_1631at 221.552 kb on - strand, within Ac3H11_1631

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
remove
218,573 - +0.4
218,573 - -0.2
218,613 + +0.7
218,613 + +0.2
218,613 + -0.7
218,613 + +0.4
218,613 + +0.5
218,613 + -0.3
218,614 - -2.0
218,614 - +1.0
218,614 - -1.4
218,614 - +0.7
218,614 - -0.3
218,617 + +1.6
218,617 + -1.0
218,617 + -0.8
218,617 + -1.2
218,617 + +1.2
218,618 - -0.9
218,618 - +0.7
218,618 - -1.3
218,618 - +0.4
218,618 - -0.3
218,771 + +0.5
218,771 + -2.3
218,772 - -0.7
218,772 - -0.4
218,841 - Ac3H11_1629 0.14 -1.6
218,897 + Ac3H11_1629 0.23 -0.5
218,898 - Ac3H11_1629 0.23 +1.8
219,362 + -1.2
219,363 - -0.5
219,363 - -0.4
219,388 + +1.1
219,389 - +0.8
219,389 - -2.7
219,392 + +0.2
219,393 - +0.8
219,393 - +0.1
219,508 + +0.6
219,509 - +0.6
220,030 + Ac3H11_1630 0.42 +0.4
220,030 + Ac3H11_1630 0.42 +0.7
220,031 - Ac3H11_1630 0.42 -0.7
220,134 + Ac3H11_1630 0.49 +0.8
220,135 - Ac3H11_1630 0.49 -2.0
220,135 - Ac3H11_1630 0.49 +0.5
220,135 - Ac3H11_1630 0.49 -0.5
220,135 - Ac3H11_1630 0.49 +0.4
220,135 - Ac3H11_1630 0.49 +0.8
220,306 + Ac3H11_1630 0.61 +1.5
220,474 + Ac3H11_1630 0.72 -1.1
220,514 - Ac3H11_1630 0.75 +0.6
220,949 + +0.4
220,949 + -1.1
220,949 + +0.2
220,949 + +0.4
220,950 - -1.3
220,950 - -0.7
220,950 - -0.1
220,950 - -0.4
220,950 - +0.4
220,969 + -1.4
220,969 + +0.5
220,970 - -1.2
221,002 + -1.5
221,002 + +1.6
221,002 + -1.1
221,003 - +0.3
221,003 - -0.4
221,003 - -0.1
221,003 - -0.3
221,053 + -0.3
221,053 + +0.1
221,053 + +0.0
221,053 + +0.8
221,053 + +1.0
221,053 + -0.3
221,053 + -0.1
221,054 - +1.2
221,054 - -1.3
221,054 - +0.7
221,054 - +1.0
221,209 + Ac3H11_1631 0.22 -1.3
221,209 + Ac3H11_1631 0.22 -0.6
221,209 + Ac3H11_1631 0.22 -0.8
221,209 + Ac3H11_1631 0.22 +0.1
221,209 + Ac3H11_1631 0.22 -1.1
221,209 + Ac3H11_1631 0.22 -0.4
221,209 + Ac3H11_1631 0.22 +0.6
221,209 + Ac3H11_1631 0.22 +0.4
221,209 + Ac3H11_1631 0.22 -0.6
221,209 + Ac3H11_1631 0.22 +0.8
221,209 + Ac3H11_1631 0.22 +0.7
221,209 + Ac3H11_1631 0.22 -1.3
221,209 + Ac3H11_1631 0.22 -0.4
221,209 + Ac3H11_1631 0.22 +0.4
221,209 + Ac3H11_1631 0.22 +1.4
221,209 + Ac3H11_1631 0.22 +0.3
221,210 - Ac3H11_1631 0.22 +0.2
221,210 - Ac3H11_1631 0.22 -0.4
221,210 - Ac3H11_1631 0.22 -1.0
221,210 - Ac3H11_1631 0.22 -1.0
221,210 - Ac3H11_1631 0.22 -1.5
221,210 - Ac3H11_1631 0.22 -0.3
221,210 - Ac3H11_1631 0.22 -2.0
221,210 - Ac3H11_1631 0.22 -0.8
221,210 - Ac3H11_1631 0.22 +0.0
221,210 - Ac3H11_1631 0.22 -0.1
221,210 - Ac3H11_1631 0.22 -1.4
221,210 - Ac3H11_1631 0.22 -0.8
221,210 - Ac3H11_1631 0.22 -2.3
221,210 - Ac3H11_1631 0.22 -0.3
221,210 - Ac3H11_1631 0.22 -0.0
221,210 - Ac3H11_1631 0.22 +1.9
221,210 - Ac3H11_1631 0.22 -1.1
221,210 - Ac3H11_1631 0.22 +1.0
221,218 + Ac3H11_1631 0.23 -0.8
221,218 + Ac3H11_1631 0.23 +0.5
221,218 + Ac3H11_1631 0.23 -2.6
221,219 - Ac3H11_1631 0.23 -0.5
221,222 - Ac3H11_1631 0.23 +0.8
221,222 - Ac3H11_1631 0.23 +0.0
221,450 - Ac3H11_1631 0.47 +0.4
221,552 - Ac3H11_1631 0.58 +0.4
221,552 - Ac3H11_1631 0.58 -1.8
221,552 - Ac3H11_1631 0.58 +0.4

Or see this region's nucleotide sequence