Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1628 and Ac3H11_1629 are separated by 262 nucleotides Ac3H11_1629 and Ac3H11_1630 are separated by 67 nucleotides
Ac3H11_1628 - Large extracellular alpha-helical protein, at 212,509 to 218,493
_1628
Ac3H11_1629 - FIG00901576: hypothetical protein, at 218,756 to 219,364
_1629
Ac3H11_1630 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 219,432 to 220,871
_1630
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.892 kb on + strand, within Ac3H11_1628 at 217.892 kb on + strand, within Ac3H11_1628 at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.093 kb on + strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.094 kb on - strand at 218.109 kb on + strand at 218.573 kb on - strand at 218.573 kb on - strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.613 kb on + strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.617 kb on + strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.618 kb on - strand at 218.771 kb on + strand at 218.771 kb on + strand at 218.772 kb on - strand at 218.772 kb on - strand at 218.841 kb on - strand, within Ac3H11_1629 at 218.897 kb on + strand, within Ac3H11_1629 at 218.898 kb on - strand, within Ac3H11_1629 at 219.362 kb on + strand at 219.363 kb on - strand at 219.363 kb on - strand at 219.388 kb on + strand at 219.389 kb on - strand at 219.389 kb on - strand at 219.392 kb on + strand at 219.393 kb on - strand at 219.393 kb on - strand at 219.508 kb on + strand at 219.509 kb on - strand at 220.030 kb on + strand, within Ac3H11_1630 at 220.030 kb on + strand, within Ac3H11_1630 at 220.031 kb on - strand, within Ac3H11_1630 at 220.134 kb on + strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.135 kb on - strand, within Ac3H11_1630 at 220.306 kb on + strand, within Ac3H11_1630
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 217,892 + Ac3H11_1628 0.90 -0.2 217,892 + Ac3H11_1628 0.90 -1.3 218,093 + +0.2 218,093 + -0.2 218,093 + +1.7 218,093 + -0.7 218,093 + -0.6 218,093 + -0.1 218,093 + -1.4 218,093 + -0.2 218,093 + -0.3 218,094 - -0.9 218,094 - -1.1 218,094 - +0.6 218,094 - +2.0 218,094 - -1.0 218,094 - -0.6 218,094 - -0.3 218,109 + +0.3 218,573 - +0.4 218,573 - -0.2 218,613 + +0.7 218,613 + +0.2 218,613 + -0.7 218,613 + +0.4 218,613 + +0.5 218,613 + -0.3 218,614 - -2.0 218,614 - +1.0 218,614 - -1.4 218,614 - +0.7 218,614 - -0.3 218,617 + +1.6 218,617 + -1.0 218,617 + -0.8 218,617 + -1.2 218,617 + +1.2 218,618 - -0.9 218,618 - +0.7 218,618 - -1.3 218,618 - +0.4 218,618 - -0.3 218,771 + +0.5 218,771 + -2.3 218,772 - -0.7 218,772 - -0.4 218,841 - Ac3H11_1629 0.14 -1.6 218,897 + Ac3H11_1629 0.23 -0.5 218,898 - Ac3H11_1629 0.23 +1.8 219,362 + -1.2 219,363 - -0.5 219,363 - -0.4 219,388 + +1.1 219,389 - +0.8 219,389 - -2.7 219,392 + +0.2 219,393 - +0.8 219,393 - +0.1 219,508 + +0.6 219,509 - +0.6 220,030 + Ac3H11_1630 0.42 +0.4 220,030 + Ac3H11_1630 0.42 +0.7 220,031 - Ac3H11_1630 0.42 -0.7 220,134 + Ac3H11_1630 0.49 +0.8 220,135 - Ac3H11_1630 0.49 -2.0 220,135 - Ac3H11_1630 0.49 +0.5 220,135 - Ac3H11_1630 0.49 -0.5 220,135 - Ac3H11_1630 0.49 +0.4 220,135 - Ac3H11_1630 0.49 +0.8 220,306 + Ac3H11_1630 0.61 +1.5
Or see this region's nucleotide sequence