Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1398 and Ac3H11_1399 are separated by 320 nucleotides Ac3H11_1399 and Ac3H11_1400 are separated by 201 nucleotides
Ac3H11_1398 - Flagellin protein FlaB, at 87,209 to 88,693
_1398
Ac3H11_1399 - Flagellin protein FlaB, at 89,014 to 90,501
_1399
Ac3H11_1400 - Flagellar hook-associated protein FliD, at 90,703 to 92,136
_1400
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 88.078 kb on - strand, within Ac3H11_1398 at 88.188 kb on + strand, within Ac3H11_1398 at 88.188 kb on + strand, within Ac3H11_1398 at 88.188 kb on + strand, within Ac3H11_1398 at 88.189 kb on - strand, within Ac3H11_1398 at 88.189 kb on - strand, within Ac3H11_1398 at 88.189 kb on - strand, within Ac3H11_1398 at 88.189 kb on - strand, within Ac3H11_1398 at 88.189 kb on - strand, within Ac3H11_1398 at 88.430 kb on + strand, within Ac3H11_1398 at 88.669 kb on + strand at 88.670 kb on - strand at 88.670 kb on - strand at 88.675 kb on + strand at 88.675 kb on + strand at 88.675 kb on + strand at 88.675 kb on + strand at 88.676 kb on - strand at 88.676 kb on - strand at 88.676 kb on - strand at 88.676 kb on - strand at 88.805 kb on + strand at 88.983 kb on + strand at 88.983 kb on + strand at 88.984 kb on - strand at 88.984 kb on - strand at 89.130 kb on + strand at 89.131 kb on - strand at 89.226 kb on + strand, within Ac3H11_1399 at 89.226 kb on + strand, within Ac3H11_1399 at 89.227 kb on - strand, within Ac3H11_1399 at 89.518 kb on + strand, within Ac3H11_1399 at 89.518 kb on + strand, within Ac3H11_1399 at 89.518 kb on + strand, within Ac3H11_1399 at 89.629 kb on + strand, within Ac3H11_1399 at 89.776 kb on + strand, within Ac3H11_1399 at 89.776 kb on + strand, within Ac3H11_1399 at 89.776 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.109 kb on + strand, within Ac3H11_1399 at 90.110 kb on - strand, within Ac3H11_1399 at 90.110 kb on - strand, within Ac3H11_1399 at 90.110 kb on - strand, within Ac3H11_1399 at 90.110 kb on - strand, within Ac3H11_1399 at 90.442 kb on - strand at 90.500 kb on - strand at 90.500 kb on - strand at 90.617 kb on + strand at 90.617 kb on + strand at 90.618 kb on - strand at 90.640 kb on + strand at 90.640 kb on + strand at 90.640 kb on + strand at 90.641 kb on - strand at 90.641 kb on - strand at 90.641 kb on - strand at 90.722 kb on + strand at 90.722 kb on + strand at 90.722 kb on + strand at 90.722 kb on + strand at 90.722 kb on + strand at 90.722 kb on + strand at 90.723 kb on - strand at 90.723 kb on - strand at 90.723 kb on - strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.836 kb on + strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand at 90.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 88,078 - Ac3H11_1398 0.59 +0.3 88,188 + Ac3H11_1398 0.66 +1.5 88,188 + Ac3H11_1398 0.66 +1.0 88,188 + Ac3H11_1398 0.66 +1.5 88,189 - Ac3H11_1398 0.66 -1.7 88,189 - Ac3H11_1398 0.66 -0.1 88,189 - Ac3H11_1398 0.66 -1.4 88,189 - Ac3H11_1398 0.66 -0.6 88,189 - Ac3H11_1398 0.66 +0.6 88,430 + Ac3H11_1398 0.82 -0.8 88,669 + +0.4 88,670 - +0.9 88,670 - -0.4 88,675 + -0.1 88,675 + -0.2 88,675 + -1.2 88,675 + -1.0 88,676 - -0.4 88,676 - +0.2 88,676 - -1.0 88,676 - -0.5 88,805 + +0.2 88,983 + +0.3 88,983 + -0.8 88,984 - +0.2 88,984 - +0.7 89,130 + +0.1 89,131 - -2.3 89,226 + Ac3H11_1399 0.14 +0.8 89,226 + Ac3H11_1399 0.14 -0.2 89,227 - Ac3H11_1399 0.14 -1.4 89,518 + Ac3H11_1399 0.34 -1.8 89,518 + Ac3H11_1399 0.34 -1.9 89,518 + Ac3H11_1399 0.34 -0.7 89,629 + Ac3H11_1399 0.41 -1.3 89,776 + Ac3H11_1399 0.51 +0.2 89,776 + Ac3H11_1399 0.51 +0.6 89,776 + Ac3H11_1399 0.51 -1.3 90,109 + Ac3H11_1399 0.74 +1.2 90,109 + Ac3H11_1399 0.74 -0.4 90,109 + Ac3H11_1399 0.74 -2.6 90,109 + Ac3H11_1399 0.74 -1.5 90,109 + Ac3H11_1399 0.74 -1.6 90,109 + Ac3H11_1399 0.74 -0.6 90,109 + Ac3H11_1399 0.74 -0.3 90,109 + Ac3H11_1399 0.74 -0.0 90,109 + Ac3H11_1399 0.74 -0.6 90,109 + Ac3H11_1399 0.74 +0.4 90,109 + Ac3H11_1399 0.74 -2.2 90,109 + Ac3H11_1399 0.74 -1.1 90,110 - Ac3H11_1399 0.74 +1.3 90,110 - Ac3H11_1399 0.74 +1.8 90,110 - Ac3H11_1399 0.74 +0.4 90,110 - Ac3H11_1399 0.74 -1.7 90,442 - -0.7 90,500 - -1.0 90,500 - +0.2 90,617 + +0.1 90,617 + +2.0 90,618 - +2.0 90,640 + +1.0 90,640 + -1.0 90,640 + -0.7 90,641 - -0.4 90,641 - -1.2 90,641 - +0.0 90,722 + -3.2 90,722 + -1.8 90,722 + +0.4 90,722 + -1.6 90,722 + -1.2 90,722 + -1.0 90,723 - -1.2 90,723 - -3.1 90,723 - +0.4 90,836 + +0.1 90,836 + -0.5 90,836 + +0.9 90,836 + +2.9 90,836 + +0.0 90,836 + -0.0 90,836 + -1.4 90,836 + -0.1 90,836 + +0.7 90,837 - -0.6 90,837 - -0.4 90,837 - +0.1 90,837 - -0.2 90,837 - +0.0 90,837 - +0.1 90,837 - +0.3 90,837 - -1.4 90,837 - +0.2 90,837 - -1.5
Or see this region's nucleotide sequence