Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_137

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_136 and Ac3H11_137 overlap by 2 nucleotidesAc3H11_137 and Ac3H11_138 are separated by 36 nucleotidesAc3H11_138 and Ac3H11_139 are separated by 17 nucleotides Ac3H11_136 - Transcriptional regulator, LysR family, at 19,861 to 20,790 _136 Ac3H11_137 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 20,789 to 22,075 _137 Ac3H11_138 - Gluconolactonase, at 22,112 to 23,035 _138 Ac3H11_139 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 23,053 to 23,955 _139 Position (kb) 20 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 19.817 kb on + strandat 19.818 kb on - strandat 19.818 kb on - strandat 19.923 kb on + strandat 19.923 kb on + strandat 19.924 kb on - strandat 19.924 kb on - strandat 19.924 kb on - strandat 19.924 kb on - strandat 19.995 kb on + strand, within Ac3H11_136at 19.996 kb on - strand, within Ac3H11_136at 20.008 kb on + strand, within Ac3H11_136at 20.009 kb on - strand, within Ac3H11_136at 20.009 kb on - strand, within Ac3H11_136at 20.053 kb on + strand, within Ac3H11_136at 20.053 kb on + strand, within Ac3H11_136at 20.053 kb on + strand, within Ac3H11_136at 20.053 kb on + strand, within Ac3H11_136at 20.054 kb on - strand, within Ac3H11_136at 20.205 kb on - strand, within Ac3H11_136at 20.297 kb on + strand, within Ac3H11_136at 20.297 kb on + strand, within Ac3H11_136at 20.298 kb on - strand, within Ac3H11_136at 20.298 kb on - strand, within Ac3H11_136at 20.298 kb on - strand, within Ac3H11_136at 20.298 kb on - strand, within Ac3H11_136at 20.324 kb on + strand, within Ac3H11_136at 20.324 kb on + strand, within Ac3H11_136at 20.324 kb on + strand, within Ac3H11_136at 20.325 kb on - strand, within Ac3H11_136at 20.393 kb on + strand, within Ac3H11_136at 20.393 kb on + strand, within Ac3H11_136at 20.394 kb on - strand, within Ac3H11_136at 20.625 kb on + strand, within Ac3H11_136at 20.626 kb on - strand, within Ac3H11_136at 20.640 kb on + strand, within Ac3H11_136at 20.640 kb on + strand, within Ac3H11_136at 20.640 kb on + strand, within Ac3H11_136at 20.641 kb on - strand, within Ac3H11_136at 20.823 kb on + strandat 20.823 kb on + strandat 20.824 kb on - strandat 20.830 kb on + strandat 20.843 kb on + strandat 20.843 kb on + strandat 20.844 kb on - strandat 20.924 kb on + strand, within Ac3H11_137at 20.924 kb on + strand, within Ac3H11_137at 20.924 kb on + strand, within Ac3H11_137at 20.924 kb on + strand, within Ac3H11_137at 20.925 kb on - strand, within Ac3H11_137at 20.925 kb on - strand, within Ac3H11_137at 20.925 kb on - strand, within Ac3H11_137at 21.029 kb on + strand, within Ac3H11_137at 21.029 kb on + strand, within Ac3H11_137at 21.029 kb on + strand, within Ac3H11_137at 21.030 kb on - strand, within Ac3H11_137at 21.074 kb on + strand, within Ac3H11_137at 21.074 kb on + strand, within Ac3H11_137at 21.075 kb on - strand, within Ac3H11_137at 21.359 kb on + strand, within Ac3H11_137at 21.359 kb on + strand, within Ac3H11_137at 21.659 kb on + strand, within Ac3H11_137at 21.659 kb on + strand, within Ac3H11_137at 21.660 kb on - strand, within Ac3H11_137at 21.660 kb on - strand, within Ac3H11_137at 21.953 kb on + strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 22.073 kb on + strandat 22.305 kb on + strand, within Ac3H11_138at 22.305 kb on + strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.470 kb on + strand, within Ac3H11_138at 22.470 kb on + strand, within Ac3H11_138at 22.471 kb on - strand, within Ac3H11_138at 22.471 kb on - strand, within Ac3H11_138at 22.549 kb on + strand, within Ac3H11_138at 22.550 kb on - strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.737 kb on + strand, within Ac3H11_138at 22.737 kb on + strand, within Ac3H11_138at 22.738 kb on - strand, within Ac3H11_138at 22.869 kb on + strand, within Ac3H11_138at 22.869 kb on + strand, within Ac3H11_138at 22.870 kb on - strand, within Ac3H11_138at 23.075 kb on + strandat 23.075 kb on + strandat 23.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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19,817 + -2.8
19,818 - -0.9
19,818 - -1.7
19,923 + -1.9
19,923 + -0.5
19,924 - +0.1
19,924 - -0.6
19,924 - +0.1
19,924 - -0.0
19,995 + Ac3H11_136 0.14 +0.5
19,996 - Ac3H11_136 0.15 +0.4
20,008 + Ac3H11_136 0.16 -2.2
20,009 - Ac3H11_136 0.16 +0.7
20,009 - Ac3H11_136 0.16 -1.6
20,053 + Ac3H11_136 0.21 +0.3
20,053 + Ac3H11_136 0.21 +2.9
20,053 + Ac3H11_136 0.21 -0.9
20,053 + Ac3H11_136 0.21 +0.1
20,054 - Ac3H11_136 0.21 +0.1
20,205 - Ac3H11_136 0.37 -1.1
20,297 + Ac3H11_136 0.47 -1.7
20,297 + Ac3H11_136 0.47 -0.4
20,298 - Ac3H11_136 0.47 +0.9
20,298 - Ac3H11_136 0.47 -0.4
20,298 - Ac3H11_136 0.47 -0.9
20,298 - Ac3H11_136 0.47 -0.2
20,324 + Ac3H11_136 0.50 -0.7
20,324 + Ac3H11_136 0.50 -0.7
20,324 + Ac3H11_136 0.50 -1.3
20,325 - Ac3H11_136 0.50 -1.0
20,393 + Ac3H11_136 0.57 -0.4
20,393 + Ac3H11_136 0.57 +0.7
20,394 - Ac3H11_136 0.57 -0.4
20,625 + Ac3H11_136 0.82 +0.0
20,626 - Ac3H11_136 0.82 -1.0
20,640 + Ac3H11_136 0.84 -0.9
20,640 + Ac3H11_136 0.84 -0.4
20,640 + Ac3H11_136 0.84 +0.4
20,641 - Ac3H11_136 0.84 +0.8
20,823 + -0.5
20,823 + -0.9
20,824 - +2.5
20,830 + -0.0
20,843 + +1.3
20,843 + +1.3
20,844 - +0.3
20,924 + Ac3H11_137 0.10 +1.7
20,924 + Ac3H11_137 0.10 -2.0
20,924 + Ac3H11_137 0.10 +0.6
20,924 + Ac3H11_137 0.10 -0.3
20,925 - Ac3H11_137 0.11 -0.9
20,925 - Ac3H11_137 0.11 +0.5
20,925 - Ac3H11_137 0.11 +2.0
21,029 + Ac3H11_137 0.19 +0.5
21,029 + Ac3H11_137 0.19 +0.0
21,029 + Ac3H11_137 0.19 +0.5
21,030 - Ac3H11_137 0.19 -0.2
21,074 + Ac3H11_137 0.22 +0.0
21,074 + Ac3H11_137 0.22 +0.0
21,075 - Ac3H11_137 0.22 -1.6
21,359 + Ac3H11_137 0.44 -0.3
21,359 + Ac3H11_137 0.44 +0.7
21,659 + Ac3H11_137 0.68 -0.6
21,659 + Ac3H11_137 0.68 +0.3
21,660 - Ac3H11_137 0.68 +0.1
21,660 - Ac3H11_137 0.68 +0.7
21,953 + +0.5
21,954 - -2.1
21,954 - +0.5
21,954 - -0.0
21,954 - +0.4
21,959 + +0.7
21,959 + -2.5
21,959 + -1.6
21,959 + -0.5
21,959 + -1.7
21,959 + -0.2
21,960 - -0.0
21,960 - -2.1
21,960 - -0.8
21,960 - +0.4
21,960 - -1.1
22,073 + -0.3
22,305 + Ac3H11_138 0.21 +0.7
22,305 + Ac3H11_138 0.21 -0.3
22,306 - Ac3H11_138 0.21 +0.7
22,306 - Ac3H11_138 0.21 -0.2
22,306 - Ac3H11_138 0.21 +2.7
22,306 - Ac3H11_138 0.21 -0.5
22,470 + Ac3H11_138 0.39 +1.7
22,470 + Ac3H11_138 0.39 +1.8
22,471 - Ac3H11_138 0.39 -1.3
22,471 - Ac3H11_138 0.39 -1.9
22,549 + Ac3H11_138 0.47 +0.9
22,550 - Ac3H11_138 0.47 -0.2
22,614 + Ac3H11_138 0.54 +0.3
22,614 + Ac3H11_138 0.54 +1.7
22,614 + Ac3H11_138 0.54 +1.1
22,615 - Ac3H11_138 0.54 -0.6
22,615 - Ac3H11_138 0.54 -0.3
22,615 - Ac3H11_138 0.54 +0.4
22,615 - Ac3H11_138 0.54 -0.4
22,615 - Ac3H11_138 0.54 -0.2
22,737 + Ac3H11_138 0.68 +1.0
22,737 + Ac3H11_138 0.68 +1.1
22,738 - Ac3H11_138 0.68 -0.0
22,869 + Ac3H11_138 0.82 +0.8
22,869 + Ac3H11_138 0.82 -0.6
22,870 - Ac3H11_138 0.82 -0.0
23,075 + +0.7
23,075 + +0.3
23,075 + +0.4

Or see this region's nucleotide sequence