Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1150 and Ac3H11_1151 are separated by 618 nucleotides Ac3H11_1151 and Ac3H11_1152 overlap by 2 nucleotides Ac3H11_1152 and Ac3H11_1153 are separated by 109 nucleotides Ac3H11_1153 and Ac3H11_1154 overlap by 17 nucleotides
Ac3H11_1150 - Major facilitator family transporter, at 102,160 to 103,407
_1150
Ac3H11_1151 - hypothetical protein, at 104,026 to 104,154
_1151
Ac3H11_1152 - hypothetical protein, at 104,153 to 104,401
_1152
Ac3H11_1153 - hypothetical protein, at 104,511 to 105,059
_1153
Ac3H11_1154 - hypothetical protein, at 105,043 to 105,876
_1154
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.082 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.479 kb on + strand at 103.479 kb on + strand at 103.565 kb on + strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.643 kb on - strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.160 kb on - strand at 104.198 kb on + strand, within Ac3H11_1152 at 104.198 kb on + strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.399 kb on + strand at 104.399 kb on + strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 105.074 kb on + strand at 105.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 103,082 + Ac3H11_1150 0.74 -1.6 103,082 + Ac3H11_1150 0.74 +1.0 103,082 + Ac3H11_1150 0.74 +0.2 103,082 + Ac3H11_1150 0.74 +0.4 103,082 + Ac3H11_1150 0.74 -0.8 103,082 + Ac3H11_1150 0.74 -1.2 103,082 + Ac3H11_1150 0.74 -0.2 103,160 + Ac3H11_1150 0.80 -0.1 103,160 + Ac3H11_1150 0.80 -0.4 103,160 + Ac3H11_1150 0.80 +0.1 103,160 + Ac3H11_1150 0.80 -0.1 103,160 + Ac3H11_1150 0.80 -1.0 103,160 + Ac3H11_1150 0.80 -0.8 103,161 - Ac3H11_1150 0.80 +0.4 103,161 - Ac3H11_1150 0.80 +0.4 103,161 - Ac3H11_1150 0.80 -0.8 103,161 - Ac3H11_1150 0.80 -1.8 103,479 + -0.1 103,479 + -1.1 103,565 + +0.1 103,566 - +0.0 103,566 - -0.4 103,566 - +0.8 103,566 - +0.2 103,570 + +0.2 103,570 + +2.4 103,570 + +0.2 103,570 + -0.1 103,570 + -2.4 103,570 + -0.1 103,571 - -0.2 103,571 - -0.8 103,571 - +0.6 103,571 - +0.1 103,571 - -1.3 103,571 - +0.3 103,571 - -1.2 103,571 - -1.2 103,643 - -0.8 103,927 + +0.3 103,927 + +0.3 103,927 + -1.4 103,927 + -0.1 103,927 + +0.4 103,927 + +0.6 103,927 + +1.0 103,927 + -1.1 103,927 + +0.3 103,927 + -0.4 103,927 + -0.2 103,928 - -0.7 103,928 - +1.9 103,928 - -1.4 103,928 - +0.7 103,928 - -0.6 103,928 - -0.0 104,159 + +0.6 104,159 + -0.6 104,159 + -0.3 104,159 + -1.1 104,159 + -0.7 104,159 + +1.2 104,159 + -0.5 104,159 + +0.3 104,159 + +0.2 104,160 - +0.1 104,198 + Ac3H11_1152 0.18 -0.2 104,198 + Ac3H11_1152 0.18 +2.4 104,199 - Ac3H11_1152 0.18 +2.0 104,199 - Ac3H11_1152 0.18 -0.7 104,199 - Ac3H11_1152 0.18 +1.0 104,399 + -1.6 104,399 + -1.0 104,400 - -0.4 104,400 - -0.4 104,400 - +1.3 104,400 - +0.3 104,400 - -2.9 105,074 + -0.3 105,081 - -1.6
Or see this region's nucleotide sequence