Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_987

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_986 and Ac3H11_987 overlap by 4 nucleotidesAc3H11_987 and Ac3H11_988 overlap by 1 nucleotidesAc3H11_988 and Ac3H11_989 overlap by 4 nucleotides Ac3H11_986 - Cobyrinic acid A,C-diamide synthase, at 108,303 to 109,664 _986 Ac3H11_987 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 109,661 to 110,248 _987 Ac3H11_988 - Vitamin B12 ABC transporter, B12-binding component BtuF, at 110,248 to 111,150 _988 Ac3H11_989 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 111,147 to 112,181 _989 Position (kb) 109 110 111Strain fitness (log2 ratio) -1 0 1at 109.107 kb on + strand, within Ac3H11_986at 109.107 kb on + strand, within Ac3H11_986at 109.107 kb on + strand, within Ac3H11_986at 109.107 kb on + strand, within Ac3H11_986at 109.108 kb on - strand, within Ac3H11_986at 109.108 kb on - strand, within Ac3H11_986at 109.108 kb on - strand, within Ac3H11_986at 109.243 kb on + strand, within Ac3H11_986at 109.243 kb on + strand, within Ac3H11_986at 109.244 kb on - strand, within Ac3H11_986at 109.244 kb on - strand, within Ac3H11_986at 109.244 kb on - strand, within Ac3H11_986at 109.244 kb on - strand, within Ac3H11_986at 109.244 kb on - strand, within Ac3H11_986at 109.244 kb on - strand, within Ac3H11_986at 109.268 kb on + strand, within Ac3H11_986at 109.268 kb on + strand, within Ac3H11_986at 109.268 kb on + strand, within Ac3H11_986at 109.482 kb on + strand, within Ac3H11_986at 109.483 kb on - strand, within Ac3H11_986at 109.483 kb on - strand, within Ac3H11_986at 109.483 kb on - strand, within Ac3H11_986at 109.596 kb on + strandat 109.596 kb on + strandat 109.597 kb on - strandat 109.597 kb on - strandat 109.597 kb on - strandat 109.597 kb on - strandat 109.597 kb on - strandat 109.661 kb on - strandat 109.661 kb on - strandat 110.052 kb on + strand, within Ac3H11_987at 110.476 kb on + strand, within Ac3H11_988at 110.807 kb on - strand, within Ac3H11_988at 110.830 kb on + strand, within Ac3H11_988at 110.831 kb on - strand, within Ac3H11_988at 110.831 kb on - strand, within Ac3H11_988at 110.831 kb on - strand, within Ac3H11_988

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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109,107 + Ac3H11_986 0.59 +0.7
109,107 + Ac3H11_986 0.59 +0.1
109,107 + Ac3H11_986 0.59 -0.1
109,107 + Ac3H11_986 0.59 +0.7
109,108 - Ac3H11_986 0.59 -0.4
109,108 - Ac3H11_986 0.59 -1.6
109,108 - Ac3H11_986 0.59 +0.6
109,243 + Ac3H11_986 0.69 +1.7
109,243 + Ac3H11_986 0.69 -0.0
109,244 - Ac3H11_986 0.69 -0.4
109,244 - Ac3H11_986 0.69 -0.9
109,244 - Ac3H11_986 0.69 -0.3
109,244 - Ac3H11_986 0.69 +0.0
109,244 - Ac3H11_986 0.69 +0.0
109,244 - Ac3H11_986 0.69 +0.1
109,268 + Ac3H11_986 0.71 -0.4
109,268 + Ac3H11_986 0.71 -0.4
109,268 + Ac3H11_986 0.71 -0.6
109,482 + Ac3H11_986 0.87 -0.0
109,483 - Ac3H11_986 0.87 +0.0
109,483 - Ac3H11_986 0.87 -0.7
109,483 - Ac3H11_986 0.87 +0.8
109,596 + +1.2
109,596 + -0.2
109,597 - +0.3
109,597 - +0.1
109,597 - -1.3
109,597 - +0.3
109,597 - +0.2
109,661 - -0.3
109,661 - +0.8
110,052 + Ac3H11_987 0.66 -0.7
110,476 + Ac3H11_988 0.25 -0.6
110,807 - Ac3H11_988 0.62 +0.5
110,830 + Ac3H11_988 0.64 -1.3
110,831 - Ac3H11_988 0.65 -0.5
110,831 - Ac3H11_988 0.65 -0.4
110,831 - Ac3H11_988 0.65 +0.1

Or see this region's nucleotide sequence