Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_921 and Ac3H11_922 are separated by 321 nucleotides Ac3H11_922 and Ac3H11_923 are separated by 9 nucleotides Ac3H11_923 and Ac3H11_924 are separated by 144 nucleotides Ac3H11_924 and Ac3H11_925 are separated by 18 nucleotides
Ac3H11_921 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 34,317 to 36,647
_921
Ac3H11_922 - Mobile element protein, at 36,969 to 37,949
_922
Ac3H11_923 - hypothetical protein, at 37,959 to 38,246
_923
Ac3H11_924 - hypothetical protein, at 38,391 to 38,732
_924
Ac3H11_925 - Tricarboxylate transport protein TctC, at 38,751 to 39,764
_925
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.139 kb on + strand, within Ac3H11_921 at 36.139 kb on + strand, within Ac3H11_921 at 36.140 kb on - strand, within Ac3H11_921 at 36.140 kb on - strand, within Ac3H11_921 at 36.140 kb on - strand, within Ac3H11_921 at 36.152 kb on - strand, within Ac3H11_921 at 36.206 kb on - strand, within Ac3H11_921 at 36.206 kb on - strand, within Ac3H11_921 at 36.206 kb on - strand, within Ac3H11_921 at 36.269 kb on - strand, within Ac3H11_921 at 36.738 kb on - strand at 36.738 kb on - strand at 36.765 kb on - strand at 36.774 kb on - strand at 36.784 kb on + strand at 36.797 kb on + strand at 36.901 kb on - strand at 36.901 kb on - strand at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.108 kb on + strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.109 kb on - strand, within Ac3H11_922 at 37.132 kb on + strand, within Ac3H11_922 at 37.132 kb on + strand, within Ac3H11_922 at 37.133 kb on - strand, within Ac3H11_922 at 37.133 kb on - strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.159 kb on + strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.160 kb on - strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.173 kb on + strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.174 kb on - strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.372 kb on + strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.373 kb on - strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.404 kb on + strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.405 kb on - strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.603 kb on + strand, within Ac3H11_922 at 37.604 kb on - strand, within Ac3H11_922 at 37.663 kb on + strand, within Ac3H11_922 at 37.664 kb on - strand, within Ac3H11_922 at 37.664 kb on - strand, within Ac3H11_922 at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.967 kb on - strand at 37.984 kb on + strand at 37.984 kb on + strand at 37.985 kb on - strand at 38.286 kb on + strand at 38.286 kb on + strand at 38.286 kb on + strand at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.691 kb on + strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924 at 38.692 kb on - strand, within Ac3H11_924
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 36,139 + Ac3H11_921 0.78 +0.4 36,139 + Ac3H11_921 0.78 -0.1 36,140 - Ac3H11_921 0.78 +0.0 36,140 - Ac3H11_921 0.78 -1.6 36,140 - Ac3H11_921 0.78 +0.1 36,152 - Ac3H11_921 0.79 -0.6 36,206 - Ac3H11_921 0.81 +0.2 36,206 - Ac3H11_921 0.81 -0.2 36,206 - Ac3H11_921 0.81 +1.7 36,269 - Ac3H11_921 0.84 -0.8 36,738 - -0.9 36,738 - +0.4 36,765 - +0.0 36,774 - +0.6 36,784 + +1.0 36,797 + +0.0 36,901 - -0.4 36,901 - +0.9 37,108 + Ac3H11_922 0.14 +0.1 37,108 + Ac3H11_922 0.14 -0.3 37,108 + Ac3H11_922 0.14 -2.9 37,108 + Ac3H11_922 0.14 -1.0 37,108 + Ac3H11_922 0.14 +0.3 37,108 + Ac3H11_922 0.14 +0.7 37,108 + Ac3H11_922 0.14 +0.4 37,108 + Ac3H11_922 0.14 -0.3 37,108 + Ac3H11_922 0.14 -0.4 37,108 + Ac3H11_922 0.14 -0.7 37,108 + Ac3H11_922 0.14 -0.3 37,108 + Ac3H11_922 0.14 -0.3 37,108 + Ac3H11_922 0.14 -2.7 37,109 - Ac3H11_922 0.14 -0.2 37,109 - Ac3H11_922 0.14 +0.1 37,109 - Ac3H11_922 0.14 -0.0 37,109 - Ac3H11_922 0.14 +0.3 37,109 - Ac3H11_922 0.14 +0.2 37,109 - Ac3H11_922 0.14 +0.4 37,109 - Ac3H11_922 0.14 +0.1 37,109 - Ac3H11_922 0.14 +0.9 37,109 - Ac3H11_922 0.14 +0.5 37,109 - Ac3H11_922 0.14 +1.7 37,132 + Ac3H11_922 0.17 -0.5 37,132 + Ac3H11_922 0.17 +0.5 37,133 - Ac3H11_922 0.17 -0.5 37,133 - Ac3H11_922 0.17 +0.8 37,159 + Ac3H11_922 0.19 +0.2 37,159 + Ac3H11_922 0.19 +0.3 37,159 + Ac3H11_922 0.19 -0.1 37,159 + Ac3H11_922 0.19 +0.1 37,159 + Ac3H11_922 0.19 +0.3 37,159 + Ac3H11_922 0.19 -0.8 37,159 + Ac3H11_922 0.19 +0.1 37,159 + Ac3H11_922 0.19 +0.2 37,159 + Ac3H11_922 0.19 -0.2 37,159 + Ac3H11_922 0.19 +1.7 37,159 + Ac3H11_922 0.19 +0.3 37,159 + Ac3H11_922 0.19 -0.5 37,159 + Ac3H11_922 0.19 +0.5 37,160 - Ac3H11_922 0.19 +0.0 37,160 - Ac3H11_922 0.19 +0.6 37,160 - Ac3H11_922 0.19 +0.7 37,160 - Ac3H11_922 0.19 -1.1 37,160 - Ac3H11_922 0.19 -0.1 37,160 - Ac3H11_922 0.19 +0.1 37,160 - Ac3H11_922 0.19 +0.3 37,160 - Ac3H11_922 0.19 +0.6 37,160 - Ac3H11_922 0.19 +1.0 37,160 - Ac3H11_922 0.19 +0.1 37,160 - Ac3H11_922 0.19 -0.3 37,160 - Ac3H11_922 0.19 -0.9 37,160 - Ac3H11_922 0.19 -1.4 37,160 - Ac3H11_922 0.19 -0.5 37,160 - Ac3H11_922 0.19 -0.3 37,173 + Ac3H11_922 0.21 -0.6 37,173 + Ac3H11_922 0.21 +0.2 37,173 + Ac3H11_922 0.21 +1.7 37,173 + Ac3H11_922 0.21 +0.7 37,173 + Ac3H11_922 0.21 +0.2 37,174 - Ac3H11_922 0.21 -0.1 37,174 - Ac3H11_922 0.21 -0.2 37,174 - Ac3H11_922 0.21 +0.1 37,174 - Ac3H11_922 0.21 +1.4 37,174 - Ac3H11_922 0.21 +0.8 37,372 + Ac3H11_922 0.41 -0.1 37,372 + Ac3H11_922 0.41 -0.9 37,372 + Ac3H11_922 0.41 +0.2 37,372 + Ac3H11_922 0.41 +1.8 37,372 + Ac3H11_922 0.41 +0.7 37,372 + Ac3H11_922 0.41 -0.9 37,372 + Ac3H11_922 0.41 +0.5 37,372 + Ac3H11_922 0.41 +1.7 37,372 + Ac3H11_922 0.41 -0.2 37,372 + Ac3H11_922 0.41 +2.0 37,372 + Ac3H11_922 0.41 -0.2 37,372 + Ac3H11_922 0.41 -0.9 37,373 - Ac3H11_922 0.41 -0.0 37,373 - Ac3H11_922 0.41 +0.8 37,373 - Ac3H11_922 0.41 +0.8 37,373 - Ac3H11_922 0.41 -0.7 37,373 - Ac3H11_922 0.41 -1.4 37,373 - Ac3H11_922 0.41 -0.4 37,373 - Ac3H11_922 0.41 -0.3 37,373 - Ac3H11_922 0.41 +0.5 37,373 - Ac3H11_922 0.41 +2.0 37,373 - Ac3H11_922 0.41 +1.6 37,373 - Ac3H11_922 0.41 +0.6 37,373 - Ac3H11_922 0.41 +0.6 37,404 + Ac3H11_922 0.44 -1.1 37,404 + Ac3H11_922 0.44 +1.4 37,404 + Ac3H11_922 0.44 +0.8 37,404 + Ac3H11_922 0.44 +1.1 37,405 - Ac3H11_922 0.44 -0.4 37,405 - Ac3H11_922 0.44 +0.2 37,405 - Ac3H11_922 0.44 +0.9 37,405 - Ac3H11_922 0.44 +1.3 37,405 - Ac3H11_922 0.44 -0.0 37,603 + Ac3H11_922 0.65 -0.1 37,603 + Ac3H11_922 0.65 +0.1 37,603 + Ac3H11_922 0.65 -0.1 37,603 + Ac3H11_922 0.65 -0.7 37,603 + Ac3H11_922 0.65 +1.0 37,603 + Ac3H11_922 0.65 +0.2 37,604 - Ac3H11_922 0.65 -0.2 37,663 + Ac3H11_922 0.71 -0.8 37,664 - Ac3H11_922 0.71 -0.4 37,664 - Ac3H11_922 0.71 +0.5 37,966 + -0.1 37,966 + -1.9 37,966 + -0.8 37,966 + +0.8 37,966 + -1.4 37,966 + -0.3 37,966 + -0.9 37,966 + -0.0 37,966 + -0.3 37,966 + +1.6 37,966 + +0.3 37,966 + -1.0 37,966 + +1.4 37,966 + +2.5 37,966 + +0.7 37,966 + -1.9 37,966 + -1.5 37,966 + -0.6 37,966 + -1.2 37,966 + -0.5 37,966 + +1.0 37,966 + +0.2 37,966 + -0.0 37,966 + -1.4 37,966 + -0.8 37,966 + +0.0 37,966 + -0.4 37,966 + +0.2 37,967 - -1.2 37,967 - +0.4 37,967 - -0.5 37,967 - -0.7 37,967 - +1.2 37,967 - +1.3 37,967 - -1.0 37,967 - -0.1 37,967 - +0.9 37,967 - -0.5 37,967 - -1.6 37,967 - -1.0 37,967 - -1.1 37,967 - -1.3 37,967 - -0.3 37,967 - +0.3 37,967 - +1.5 37,967 - +0.0 37,967 - +0.7 37,984 + +0.5 37,984 + -0.9 37,985 - -1.1 38,286 + +1.0 38,286 + +0.5 38,286 + +0.1 38,691 + Ac3H11_924 0.88 +0.1 38,691 + Ac3H11_924 0.88 -1.0 38,691 + Ac3H11_924 0.88 +0.4 38,691 + Ac3H11_924 0.88 -1.6 38,691 + Ac3H11_924 0.88 -0.1 38,691 + Ac3H11_924 0.88 -1.6 38,692 - Ac3H11_924 0.88 +0.5 38,692 - Ac3H11_924 0.88 -0.0 38,692 - Ac3H11_924 0.88 +1.2 38,692 - Ac3H11_924 0.88 -0.1
Or see this region's nucleotide sequence