Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_919

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_918 and Ac3H11_919 are separated by 299 nucleotidesAc3H11_919 and Ac3H11_920 are separated by 131 nucleotidesAc3H11_920 and Ac3H11_921 are separated by 128 nucleotides Ac3H11_918 - hypothetical protein, at 31,296 to 32,165 _918 Ac3H11_919 - Transcriptional regulator, LysR family, at 32,465 to 33,412 _919 Ac3H11_920 - FMN-dependent NADH-azoreductase, at 33,544 to 34,188 _920 Ac3H11_921 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 34,317 to 36,647 _921 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3at 31.738 kb on + strand, within Ac3H11_918at 31.762 kb on + strand, within Ac3H11_918at 31.762 kb on + strand, within Ac3H11_918at 31.762 kb on + strand, within Ac3H11_918at 31.763 kb on - strand, within Ac3H11_918at 31.763 kb on - strand, within Ac3H11_918at 31.951 kb on + strand, within Ac3H11_918at 31.951 kb on + strand, within Ac3H11_918at 31.952 kb on - strand, within Ac3H11_918at 31.952 kb on - strand, within Ac3H11_918at 31.952 kb on - strand, within Ac3H11_918at 32.362 kb on + strandat 32.362 kb on + strandat 32.363 kb on - strandat 32.363 kb on - strandat 32.363 kb on - strandat 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.679 kb on + strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.680 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.722 kb on - strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.751 kb on + strand, within Ac3H11_919at 32.891 kb on + strand, within Ac3H11_919at 32.891 kb on + strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 32.892 kb on - strand, within Ac3H11_919at 33.219 kb on + strand, within Ac3H11_919at 33.220 kb on - strand, within Ac3H11_919at 33.220 kb on - strand, within Ac3H11_919at 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.433 kb on + strandat 33.658 kb on + strand, within Ac3H11_920at 33.658 kb on + strand, within Ac3H11_920at 33.658 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.898 kb on + strand, within Ac3H11_920at 33.898 kb on + strand, within Ac3H11_920at 33.899 kb on - strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.971 kb on - strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.172 kb on + strandat 34.173 kb on - strandat 34.173 kb on - strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.187 kb on - strandat 34.187 kb on - strandat 34.187 kb on - strandat 34.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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31,738 + Ac3H11_918 0.51 -0.2
31,762 + Ac3H11_918 0.54 +3.0
31,762 + Ac3H11_918 0.54 -0.1
31,762 + Ac3H11_918 0.54 +1.0
31,763 - Ac3H11_918 0.54 -0.2
31,763 - Ac3H11_918 0.54 +0.7
31,951 + Ac3H11_918 0.75 +1.5
31,951 + Ac3H11_918 0.75 +0.5
31,952 - Ac3H11_918 0.75 -0.2
31,952 - Ac3H11_918 0.75 +0.2
31,952 - Ac3H11_918 0.75 -0.6
32,362 + -0.1
32,362 + -0.1
32,363 - -0.8
32,363 - -0.4
32,363 - -0.9
32,679 + Ac3H11_919 0.23 -0.7
32,679 + Ac3H11_919 0.23 +0.1
32,679 + Ac3H11_919 0.23 +0.4
32,679 + Ac3H11_919 0.23 +0.4
32,679 + Ac3H11_919 0.23 +1.1
32,679 + Ac3H11_919 0.23 +1.9
32,679 + Ac3H11_919 0.23 -0.7
32,679 + Ac3H11_919 0.23 +0.9
32,679 + Ac3H11_919 0.23 +0.0
32,679 + Ac3H11_919 0.23 -0.3
32,679 + Ac3H11_919 0.23 -1.5
32,680 - Ac3H11_919 0.23 +0.1
32,680 - Ac3H11_919 0.23 -0.8
32,680 - Ac3H11_919 0.23 +0.9
32,680 - Ac3H11_919 0.23 -0.2
32,680 - Ac3H11_919 0.23 -0.0
32,680 - Ac3H11_919 0.23 +0.5
32,680 - Ac3H11_919 0.23 +0.7
32,680 - Ac3H11_919 0.23 -0.1
32,722 - Ac3H11_919 0.27 +1.3
32,722 - Ac3H11_919 0.27 -1.0
32,722 - Ac3H11_919 0.27 -0.6
32,722 - Ac3H11_919 0.27 +1.6
32,751 + Ac3H11_919 0.30 -0.7
32,751 + Ac3H11_919 0.30 -0.3
32,751 + Ac3H11_919 0.30 +1.2
32,891 + Ac3H11_919 0.45 +0.4
32,891 + Ac3H11_919 0.45 +1.0
32,892 - Ac3H11_919 0.45 -0.8
32,892 - Ac3H11_919 0.45 -0.9
32,892 - Ac3H11_919 0.45 +0.1
33,219 + Ac3H11_919 0.80 +0.7
33,220 - Ac3H11_919 0.80 -0.1
33,220 - Ac3H11_919 0.80 +1.1
33,387 + +0.1
33,387 + -1.0
33,387 + +0.4
33,387 + -0.4
33,387 + -1.0
33,387 + +0.4
33,387 + +0.4
33,388 - +0.4
33,388 - +0.6
33,388 - -0.3
33,388 - -0.7
33,412 + +1.1
33,412 + +1.0
33,412 + +0.4
33,412 + -0.2
33,413 - -0.3
33,413 - +1.9
33,413 - +0.5
33,413 - -2.0
33,433 + -0.7
33,658 + Ac3H11_920 0.18 -0.1
33,658 + Ac3H11_920 0.18 -0.6
33,658 + Ac3H11_920 0.18 -0.3
33,826 + Ac3H11_920 0.44 +0.1
33,826 + Ac3H11_920 0.44 +0.4
33,826 + Ac3H11_920 0.44 -0.3
33,826 + Ac3H11_920 0.44 +1.5
33,826 + Ac3H11_920 0.44 -0.1
33,827 - Ac3H11_920 0.44 -1.3
33,827 - Ac3H11_920 0.44 -0.2
33,827 - Ac3H11_920 0.44 +1.2
33,898 + Ac3H11_920 0.55 +0.4
33,898 + Ac3H11_920 0.55 +2.0
33,899 - Ac3H11_920 0.55 +0.4
33,970 + Ac3H11_920 0.66 -2.0
33,970 + Ac3H11_920 0.66 +0.2
33,970 + Ac3H11_920 0.66 +1.0
33,971 - Ac3H11_920 0.66 +0.8
34,015 + Ac3H11_920 0.73 +0.1
34,015 + Ac3H11_920 0.73 -1.1
34,015 + Ac3H11_920 0.73 +0.0
34,016 - Ac3H11_920 0.73 +0.4
34,016 - Ac3H11_920 0.73 +0.6
34,016 - Ac3H11_920 0.73 +0.8
34,016 - Ac3H11_920 0.73 -0.4
34,172 + +1.0
34,173 - +0.1
34,173 - -0.5
34,186 + +1.4
34,186 + +0.0
34,186 + -1.3
34,186 + +0.4
34,187 - +0.4
34,187 - -0.0
34,187 - +1.6
34,319 - -1.4

Or see this region's nucleotide sequence