Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_896 and Ac3H11_897 are separated by 93 nucleotides Ac3H11_897 and Ac3H11_898 are separated by 358 nucleotides Ac3H11_898 and Ac3H11_899 are separated by 17 nucleotides
Ac3H11_896 - macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif., at 2,494 to 6,606
_896
Ac3H11_897 - Beta-lactamase (EC 3.5.2.6), at 6,700 to 8,571
_897
Ac3H11_898 - hypothetical protein, at 8,930 to 9,181
_898
Ac3H11_899 - Cell division protein FtsH (EC 3.4.24.-), at 9,199 to 11,226
_899
Position (kb)
6
7
8
9 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6.065 kb on + strand, within Ac3H11_896 at 6.065 kb on + strand, within Ac3H11_896 at 6.065 kb on + strand, within Ac3H11_896 at 6.128 kb on + strand, within Ac3H11_896 at 6.634 kb on + strand at 6.634 kb on + strand at 6.634 kb on + strand at 6.634 kb on + strand at 6.635 kb on - strand at 6.635 kb on - strand at 6.749 kb on + strand at 6.887 kb on + strand at 6.888 kb on - strand, within Ac3H11_897 at 7.259 kb on + strand, within Ac3H11_897 at 7.259 kb on + strand at 7.259 kb on + strand, within Ac3H11_897 at 7.260 kb on - strand, within Ac3H11_897 at 7.260 kb on - strand, within Ac3H11_897 at 7.315 kb on + strand, within Ac3H11_897 at 7.315 kb on + strand, within Ac3H11_897 at 7.315 kb on + strand, within Ac3H11_897 at 7.316 kb on - strand, within Ac3H11_897 at 7.316 kb on - strand, within Ac3H11_897 at 7.375 kb on + strand, within Ac3H11_897 at 7.474 kb on + strand, within Ac3H11_897 at 7.475 kb on - strand, within Ac3H11_897 at 7.475 kb on - strand, within Ac3H11_897 at 7.475 kb on - strand, within Ac3H11_897 at 7.792 kb on + strand, within Ac3H11_897 at 7.792 kb on + strand, within Ac3H11_897 at 7.792 kb on + strand, within Ac3H11_897 at 7.792 kb on + strand, within Ac3H11_897 at 7.792 kb on + strand, within Ac3H11_897 at 7.793 kb on - strand, within Ac3H11_897 at 7.793 kb on - strand, within Ac3H11_897 at 7.793 kb on - strand, within Ac3H11_897 at 7.793 kb on - strand, within Ac3H11_897 at 7.793 kb on - strand, within Ac3H11_897 at 7.793 kb on - strand, within Ac3H11_897 at 7.793 kb on - strand, within Ac3H11_897 at 7.993 kb on + strand, within Ac3H11_897 at 7.993 kb on + strand, within Ac3H11_897 at 7.993 kb on + strand, within Ac3H11_897 at 7.993 kb on + strand, within Ac3H11_897 at 7.993 kb on + strand, within Ac3H11_897 at 7.994 kb on - strand, within Ac3H11_897 at 7.994 kb on - strand, within Ac3H11_897 at 7.994 kb on - strand, within Ac3H11_897 at 7.994 kb on - strand, within Ac3H11_897 at 7.994 kb on - strand, within Ac3H11_897 at 7.994 kb on - strand, within Ac3H11_897 at 8.155 kb on + strand, within Ac3H11_897 at 8.185 kb on + strand, within Ac3H11_897 at 8.221 kb on + strand, within Ac3H11_897 at 8.644 kb on + strand at 8.644 kb on + strand at 8.645 kb on - strand at 8.645 kb on - strand at 8.764 kb on + strand at 8.765 kb on - strand at 8.765 kb on - strand at 8.765 kb on - strand at 8.895 kb on - strand at 8.895 kb on - strand at 9.198 kb on + strand at 9.198 kb on + strand at 9.198 kb on + strand at 9.199 kb on - strand at 9.199 kb on - strand at 9.199 kb on - strand at 9.199 kb on - strand at 9.379 kb on + strand at 9.380 kb on - strand at 9.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 6,065 + Ac3H11_896 0.87 -0.2 6,065 + Ac3H11_896 0.87 -0.5 6,065 + Ac3H11_896 0.87 +0.9 6,128 + Ac3H11_896 0.88 +0.5 6,634 + -1.5 6,634 + -1.3 6,634 + +0.7 6,634 + +0.2 6,635 - +0.8 6,635 - +0.3 6,749 + +1.1 6,887 + -0.9 6,888 - Ac3H11_897 0.10 +0.9 7,259 + Ac3H11_897 0.30 -0.1 7,259 + -0.3 7,259 + Ac3H11_897 0.30 -0.2 7,260 - Ac3H11_897 0.30 +0.1 7,260 - Ac3H11_897 0.30 -0.3 7,315 + Ac3H11_897 0.33 -1.0 7,315 + Ac3H11_897 0.33 -1.6 7,315 + Ac3H11_897 0.33 -2.3 7,316 - Ac3H11_897 0.33 +0.1 7,316 - Ac3H11_897 0.33 -1.9 7,375 + Ac3H11_897 0.36 -0.2 7,474 + Ac3H11_897 0.41 +1.3 7,475 - Ac3H11_897 0.41 +0.1 7,475 - Ac3H11_897 0.41 +1.1 7,475 - Ac3H11_897 0.41 -0.4 7,792 + Ac3H11_897 0.58 -0.5 7,792 + Ac3H11_897 0.58 +0.9 7,792 + Ac3H11_897 0.58 -0.8 7,792 + Ac3H11_897 0.58 +1.7 7,792 + Ac3H11_897 0.58 -0.7 7,793 - Ac3H11_897 0.58 -0.4 7,793 - Ac3H11_897 0.58 +0.6 7,793 - Ac3H11_897 0.58 +0.1 7,793 - Ac3H11_897 0.58 -1.3 7,793 - Ac3H11_897 0.58 +0.0 7,793 - Ac3H11_897 0.58 -0.0 7,793 - Ac3H11_897 0.58 +0.8 7,993 + Ac3H11_897 0.69 +0.7 7,993 + Ac3H11_897 0.69 +1.8 7,993 + Ac3H11_897 0.69 +0.4 7,993 + Ac3H11_897 0.69 +1.1 7,993 + Ac3H11_897 0.69 +1.3 7,994 - Ac3H11_897 0.69 -0.5 7,994 - Ac3H11_897 0.69 +0.7 7,994 - Ac3H11_897 0.69 -1.5 7,994 - Ac3H11_897 0.69 +0.9 7,994 - Ac3H11_897 0.69 +0.5 7,994 - Ac3H11_897 0.69 -1.1 8,155 + Ac3H11_897 0.78 +0.3 8,185 + Ac3H11_897 0.79 -1.9 8,221 + Ac3H11_897 0.81 +1.2 8,644 + +0.5 8,644 + +0.0 8,645 - +0.4 8,645 - -1.1 8,764 + +0.8 8,765 - -0.1 8,765 - -0.3 8,765 - +0.5 8,895 - -0.9 8,895 - +0.7 9,198 + +0.5 9,198 + +0.0 9,198 + +0.5 9,199 - -0.2 9,199 - +1.2 9,199 - -0.2 9,199 - -0.6 9,379 + +0.8 9,380 - -1.5 9,380 - +0.5
Or see this region's nucleotide sequence