Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_475 and Ac3H11_476 are separated by 222 nucleotides Ac3H11_476 and Ac3H11_477 are separated by 48 nucleotides
Ac3H11_475 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 171,157 to 172,233
_475
Ac3H11_476 - hypothetical protein, at 172,456 to 172,608
_476
Ac3H11_477 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 172,657 to 174,171
_477
Position (kb) 172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 171.580 kb on + strand, within Ac3H11_475 at 171.580 kb on + strand, within Ac3H11_475 at 171.581 kb on - strand, within Ac3H11_475 at 171.581 kb on - strand, within Ac3H11_475 at 171.861 kb on - strand, within Ac3H11_475 at 171.893 kb on - strand, within Ac3H11_475 at 171.893 kb on - strand, within Ac3H11_475 at 171.945 kb on + strand, within Ac3H11_475 at 172.021 kb on + strand, within Ac3H11_475 at 172.022 kb on - strand, within Ac3H11_475 at 172.022 kb on - strand, within Ac3H11_475 at 172.022 kb on - strand, within Ac3H11_475 at 172.045 kb on + strand, within Ac3H11_475 at 172.045 kb on + strand, within Ac3H11_475 at 172.045 kb on + strand, within Ac3H11_475 at 172.046 kb on - strand, within Ac3H11_475 at 172.046 kb on - strand, within Ac3H11_475 at 172.046 kb on - strand, within Ac3H11_475 at 172.186 kb on + strand at 172.186 kb on + strand at 172.187 kb on - strand at 172.187 kb on - strand at 172.187 kb on - strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.222 kb on + strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.327 kb on + strand at 172.327 kb on + strand at 172.327 kb on + strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.328 kb on - strand at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.552 kb on + strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.553 kb on - strand, within Ac3H11_476 at 172.574 kb on + strand, within Ac3H11_476 at 172.574 kb on + strand, within Ac3H11_476 at 172.575 kb on - strand, within Ac3H11_476 at 172.575 kb on - strand, within Ac3H11_476 at 172.772 kb on + strand at 172.772 kb on + strand at 172.772 kb on + strand at 172.773 kb on - strand at 172.773 kb on - strand at 172.857 kb on - strand, within Ac3H11_477 at 173.144 kb on + strand, within Ac3H11_477 at 173.145 kb on - strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.167 kb on + strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.168 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.250 kb on - strand, within Ac3H11_477 at 173.348 kb on + strand, within Ac3H11_477 at 173.348 kb on + strand, within Ac3H11_477 at 173.349 kb on - strand, within Ac3H11_477 at 173.413 kb on + strand, within Ac3H11_477 at 173.413 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.435 kb on + strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.436 kb on - strand, within Ac3H11_477 at 173.471 kb on + strand, within Ac3H11_477 at 173.472 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.541 kb on - strand, within Ac3H11_477 at 173.594 kb on + strand, within Ac3H11_477
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 171,580 + Ac3H11_475 0.39 +0.8 171,580 + Ac3H11_475 0.39 +1.2 171,581 - Ac3H11_475 0.39 +1.2 171,581 - Ac3H11_475 0.39 -0.4 171,861 - Ac3H11_475 0.65 -0.5 171,893 - Ac3H11_475 0.68 -0.0 171,893 - Ac3H11_475 0.68 -0.1 171,945 + Ac3H11_475 0.73 -1.1 172,021 + Ac3H11_475 0.80 -0.1 172,022 - Ac3H11_475 0.80 +0.1 172,022 - Ac3H11_475 0.80 -0.1 172,022 - Ac3H11_475 0.80 +0.3 172,045 + Ac3H11_475 0.82 +0.9 172,045 + Ac3H11_475 0.82 -2.3 172,045 + Ac3H11_475 0.82 +0.8 172,046 - Ac3H11_475 0.83 +1.0 172,046 - Ac3H11_475 0.83 +0.5 172,046 - Ac3H11_475 0.83 +0.2 172,186 + -0.7 172,186 + +0.7 172,187 - -0.1 172,187 - +0.4 172,187 - +0.7 172,222 + -0.9 172,222 + +1.5 172,222 + +1.1 172,222 + +0.9 172,222 + +1.3 172,223 - +0.3 172,223 - -0.7 172,327 + +0.1 172,327 + -0.9 172,327 + +1.5 172,328 - -1.3 172,328 - +0.5 172,328 - -0.5 172,328 - -0.2 172,328 - +1.6 172,552 + Ac3H11_476 0.63 +0.7 172,552 + Ac3H11_476 0.63 -0.7 172,552 + Ac3H11_476 0.63 +0.4 172,552 + Ac3H11_476 0.63 +0.6 172,552 + Ac3H11_476 0.63 -0.0 172,553 - Ac3H11_476 0.63 -1.2 172,553 - Ac3H11_476 0.63 +0.3 172,553 - Ac3H11_476 0.63 +0.1 172,553 - Ac3H11_476 0.63 -0.1 172,574 + Ac3H11_476 0.77 +0.3 172,574 + Ac3H11_476 0.77 -0.5 172,575 - Ac3H11_476 0.78 +0.6 172,575 - Ac3H11_476 0.78 +0.4 172,772 + -1.6 172,772 + +2.3 172,772 + -1.2 172,773 - +0.0 172,773 - -0.5 172,857 - Ac3H11_477 0.13 -0.9 173,144 + Ac3H11_477 0.32 +0.2 173,145 - Ac3H11_477 0.32 -1.0 173,167 + Ac3H11_477 0.34 -1.5 173,167 + Ac3H11_477 0.34 -0.6 173,167 + Ac3H11_477 0.34 -0.8 173,167 + Ac3H11_477 0.34 -0.5 173,167 + Ac3H11_477 0.34 -1.4 173,167 + Ac3H11_477 0.34 -0.6 173,167 + Ac3H11_477 0.34 -0.8 173,167 + Ac3H11_477 0.34 -0.9 173,168 - Ac3H11_477 0.34 -1.0 173,168 - Ac3H11_477 0.34 -0.8 173,168 - Ac3H11_477 0.34 -1.2 173,168 - Ac3H11_477 0.34 -1.6 173,168 - Ac3H11_477 0.34 -2.5 173,168 - Ac3H11_477 0.34 +1.4 173,250 - Ac3H11_477 0.39 -0.6 173,250 - Ac3H11_477 0.39 -0.4 173,250 - Ac3H11_477 0.39 -0.9 173,348 + Ac3H11_477 0.46 +0.6 173,348 + Ac3H11_477 0.46 +1.0 173,349 - Ac3H11_477 0.46 -0.6 173,413 + Ac3H11_477 0.50 -0.4 173,413 + Ac3H11_477 0.50 -0.3 173,435 + Ac3H11_477 0.51 -0.1 173,435 + Ac3H11_477 0.51 -2.0 173,435 + Ac3H11_477 0.51 -0.7 173,435 + Ac3H11_477 0.51 -1.2 173,435 + Ac3H11_477 0.51 -0.4 173,435 + Ac3H11_477 0.51 +0.7 173,435 + Ac3H11_477 0.51 -0.9 173,435 + Ac3H11_477 0.51 -0.3 173,435 + Ac3H11_477 0.51 -2.4 173,435 + Ac3H11_477 0.51 -1.4 173,435 + Ac3H11_477 0.51 +0.9 173,435 + Ac3H11_477 0.51 +0.7 173,435 + Ac3H11_477 0.51 -0.3 173,435 + Ac3H11_477 0.51 -0.9 173,435 + Ac3H11_477 0.51 -0.3 173,435 + Ac3H11_477 0.51 -0.3 173,435 + +0.3 173,435 + Ac3H11_477 0.51 -0.3 173,435 + Ac3H11_477 0.51 -0.4 173,435 + Ac3H11_477 0.51 -0.3 173,435 + Ac3H11_477 0.51 -1.9 173,435 + Ac3H11_477 0.51 -0.6 173,435 + Ac3H11_477 0.51 -3.2 173,435 + Ac3H11_477 0.51 -1.1 173,436 - Ac3H11_477 0.51 +0.1 173,436 - Ac3H11_477 0.51 +1.9 173,436 - Ac3H11_477 0.51 -1.4 173,436 - Ac3H11_477 0.51 -0.5 173,436 - Ac3H11_477 0.51 -2.0 173,436 - Ac3H11_477 0.51 -1.5 173,436 - Ac3H11_477 0.51 -0.4 173,436 - Ac3H11_477 0.51 +0.1 173,436 - Ac3H11_477 0.51 +0.2 173,436 - Ac3H11_477 0.51 -1.6 173,436 - Ac3H11_477 0.51 -0.9 173,436 - Ac3H11_477 0.51 -0.2 173,436 - Ac3H11_477 0.51 -2.5 173,436 - Ac3H11_477 0.51 -0.6 173,436 - Ac3H11_477 0.51 -1.2 173,436 - Ac3H11_477 0.51 -0.3 173,436 - Ac3H11_477 0.51 -0.1 173,436 - Ac3H11_477 0.51 -0.5 173,471 + Ac3H11_477 0.54 -0.2 173,472 - Ac3H11_477 0.54 -0.0 173,541 - Ac3H11_477 0.58 -0.4 173,541 - Ac3H11_477 0.58 -0.3 173,541 - Ac3H11_477 0.58 -0.1 173,541 - Ac3H11_477 0.58 -0.4 173,594 + Ac3H11_477 0.62 -2.8
Or see this region's nucleotide sequence