Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4488 and Ac3H11_4489 are separated by 85 nucleotides Ac3H11_4489 and Ac3H11_4490 are separated by 331 nucleotides
Ac3H11_4488 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 75,898 to 77,877
_4488
Ac3H11_4489 - Nitrate/nitrite response regulator protein, at 77,963 to 78,664
_4489
Ac3H11_4490 - Nitrate/nitrite transporter, at 78,996 to 80,288
_4490
Position (kb) 77
78
79 Strain fitness (log2 ratio) -1
0
1
2
3 at 77.317 kb on + strand, within Ac3H11_4488 at 77.318 kb on - strand, within Ac3H11_4488 at 77.318 kb on - strand, within Ac3H11_4488 at 77.318 kb on - strand, within Ac3H11_4488 at 77.318 kb on - strand, within Ac3H11_4488 at 77.318 kb on - strand, within Ac3H11_4488 at 77.825 kb on + strand at 77.825 kb on + strand at 77.825 kb on + strand at 77.826 kb on - strand at 77.826 kb on - strand at 77.826 kb on - strand at 77.876 kb on - strand at 77.876 kb on - strand at 77.876 kb on - strand at 78.635 kb on + strand at 78.635 kb on + strand at 78.636 kb on - strand at 78.636 kb on - strand at 78.636 kb on - strand at 78.840 kb on + strand at 78.840 kb on + strand at 78.841 kb on - strand at 78.841 kb on - strand at 78.884 kb on + strand at 78.884 kb on + strand at 78.884 kb on + strand at 78.884 kb on + strand at 78.885 kb on - strand at 78.885 kb on - strand at 78.885 kb on - strand at 78.950 kb on + strand at 78.951 kb on - strand at 78.958 kb on + strand at 78.963 kb on + strand at 78.963 kb on + strand at 79.305 kb on + strand, within Ac3H11_4490 at 79.305 kb on + strand, within Ac3H11_4490 at 79.306 kb on - strand, within Ac3H11_4490 at 79.306 kb on - strand, within Ac3H11_4490 at 79.306 kb on - strand, within Ac3H11_4490 at 79.317 kb on + strand, within Ac3H11_4490 at 79.379 kb on + strand, within Ac3H11_4490 at 79.380 kb on - strand, within Ac3H11_4490 at 79.386 kb on + strand, within Ac3H11_4490 at 79.386 kb on + strand, within Ac3H11_4490 at 79.386 kb on + strand, within Ac3H11_4490 at 79.386 kb on + strand, within Ac3H11_4490 at 79.386 kb on + strand, within Ac3H11_4490 at 79.387 kb on - strand, within Ac3H11_4490 at 79.387 kb on - strand, within Ac3H11_4490 at 79.527 kb on + strand, within Ac3H11_4490 at 79.527 kb on + strand, within Ac3H11_4490 at 79.528 kb on - strand, within Ac3H11_4490 at 79.528 kb on - strand, within Ac3H11_4490 at 79.528 kb on - strand, within Ac3H11_4490 at 79.659 kb on + strand, within Ac3H11_4490 at 79.659 kb on + strand, within Ac3H11_4490 at 79.660 kb on - strand, within Ac3H11_4490 at 79.660 kb on - strand, within Ac3H11_4490 at 79.660 kb on - strand, within Ac3H11_4490
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 77,317 + Ac3H11_4488 0.72 +0.4 77,318 - Ac3H11_4488 0.72 +0.2 77,318 - Ac3H11_4488 0.72 +1.8 77,318 - Ac3H11_4488 0.72 +0.1 77,318 - Ac3H11_4488 0.72 +0.8 77,318 - Ac3H11_4488 0.72 -0.5 77,825 + +0.8 77,825 + -1.2 77,825 + +1.2 77,826 - -1.4 77,826 - +0.3 77,826 - +0.6 77,876 - -1.4 77,876 - +0.8 77,876 - +0.5 78,635 + +0.9 78,635 + +2.1 78,636 - +0.3 78,636 - -0.0 78,636 - +2.4 78,840 + +0.5 78,840 + -1.0 78,841 - -1.0 78,841 - +3.1 78,884 + -0.2 78,884 + -0.8 78,884 + -0.6 78,884 + +0.8 78,885 - +0.9 78,885 - +0.2 78,885 - +0.8 78,950 + -0.6 78,951 - +2.3 78,958 + +0.3 78,963 + +0.8 78,963 + +0.6 79,305 + Ac3H11_4490 0.24 -0.3 79,305 + Ac3H11_4490 0.24 +0.6 79,306 - Ac3H11_4490 0.24 -0.6 79,306 - Ac3H11_4490 0.24 -0.0 79,306 - Ac3H11_4490 0.24 +0.1 79,317 + Ac3H11_4490 0.25 -0.0 79,379 + Ac3H11_4490 0.30 +1.9 79,380 - Ac3H11_4490 0.30 +1.0 79,386 + Ac3H11_4490 0.30 +1.0 79,386 + Ac3H11_4490 0.30 -0.4 79,386 + Ac3H11_4490 0.30 -0.4 79,386 + Ac3H11_4490 0.30 -1.1 79,386 + Ac3H11_4490 0.30 -1.0 79,387 - Ac3H11_4490 0.30 -0.5 79,387 - Ac3H11_4490 0.30 -0.8 79,527 + Ac3H11_4490 0.41 +0.4 79,527 + Ac3H11_4490 0.41 +0.0 79,528 - Ac3H11_4490 0.41 +0.3 79,528 - Ac3H11_4490 0.41 +0.1 79,528 - Ac3H11_4490 0.41 +0.9 79,659 + Ac3H11_4490 0.51 -0.1 79,659 + Ac3H11_4490 0.51 +0.2 79,660 - Ac3H11_4490 0.51 +0.0 79,660 - Ac3H11_4490 0.51 -0.8 79,660 - Ac3H11_4490 0.51 -0.2
Or see this region's nucleotide sequence