Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4484 and Ac3H11_4485 are separated by 20 nucleotides Ac3H11_4485 and Ac3H11_4486 are separated by 112 nucleotides
Ac3H11_4484 - Glycine cleavage system transcriptional activator GcvA, at 70,699 to 71,604
_4484
Ac3H11_4485 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 71,625 to 72,476
_4485
Ac3H11_4486 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 72,589 to 74,889
_4486
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.778 kb on + strand at 70.778 kb on + strand at 70.778 kb on + strand at 70.778 kb on + strand at 70.778 kb on + strand at 70.779 kb on - strand at 70.779 kb on - strand at 70.779 kb on - strand at 70.779 kb on - strand at 70.779 kb on - strand at 70.779 kb on - strand at 70.779 kb on - strand at 70.779 kb on - strand at 71.086 kb on + strand, within Ac3H11_4484 at 71.086 kb on + strand, within Ac3H11_4484 at 71.086 kb on + strand, within Ac3H11_4484 at 71.086 kb on + strand, within Ac3H11_4484 at 71.087 kb on - strand, within Ac3H11_4484 at 71.087 kb on - strand, within Ac3H11_4484 at 71.087 kb on - strand, within Ac3H11_4484 at 71.087 kb on - strand, within Ac3H11_4484 at 71.087 kb on - strand, within Ac3H11_4484 at 71.123 kb on + strand, within Ac3H11_4484 at 71.123 kb on + strand, within Ac3H11_4484 at 71.124 kb on - strand, within Ac3H11_4484 at 71.124 kb on - strand, within Ac3H11_4484 at 71.170 kb on + strand, within Ac3H11_4484 at 71.170 kb on + strand, within Ac3H11_4484 at 71.170 kb on + strand, within Ac3H11_4484 at 71.170 kb on + strand, within Ac3H11_4484 at 71.170 kb on + strand, within Ac3H11_4484 at 71.171 kb on - strand, within Ac3H11_4484 at 71.171 kb on - strand, within Ac3H11_4484 at 71.171 kb on - strand, within Ac3H11_4484 at 71.369 kb on + strand, within Ac3H11_4484 at 71.419 kb on + strand, within Ac3H11_4484 at 71.419 kb on + strand, within Ac3H11_4484 at 71.419 kb on + strand, within Ac3H11_4484 at 71.419 kb on + strand, within Ac3H11_4484 at 71.419 kb on + strand, within Ac3H11_4484 at 71.419 kb on + strand, within Ac3H11_4484 at 71.419 kb on + strand, within Ac3H11_4484 at 71.420 kb on - strand, within Ac3H11_4484 at 71.420 kb on - strand, within Ac3H11_4484 at 72.522 kb on + strand at 72.523 kb on - strand at 72.598 kb on + strand at 72.598 kb on + strand at 72.598 kb on + strand at 72.598 kb on + strand at 72.598 kb on + strand at 72.599 kb on - strand at 72.599 kb on - strand at 72.706 kb on + strand at 72.706 kb on + strand at 72.706 kb on + strand at 72.707 kb on - strand at 73.003 kb on + strand, within Ac3H11_4486 at 73.003 kb on + strand, within Ac3H11_4486 at 73.003 kb on + strand, within Ac3H11_4486 at 73.003 kb on + strand, within Ac3H11_4486 at 73.003 kb on + strand, within Ac3H11_4486 at 73.004 kb on - strand, within Ac3H11_4486 at 73.004 kb on - strand, within Ac3H11_4486 at 73.004 kb on - strand, within Ac3H11_4486 at 73.046 kb on + strand, within Ac3H11_4486 at 73.046 kb on + strand, within Ac3H11_4486 at 73.046 kb on + strand, within Ac3H11_4486 at 73.286 kb on - strand, within Ac3H11_4486 at 73.355 kb on - strand, within Ac3H11_4486 at 73.355 kb on - strand, within Ac3H11_4486
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 70,778 + +0.5 70,778 + -0.4 70,778 + -0.1 70,778 + -2.0 70,778 + +2.1 70,779 - +0.9 70,779 - -0.0 70,779 - -0.8 70,779 - +1.2 70,779 - +1.5 70,779 - -0.9 70,779 - +1.1 70,779 - -0.5 71,086 + Ac3H11_4484 0.43 -1.2 71,086 + Ac3H11_4484 0.43 -0.3 71,086 + Ac3H11_4484 0.43 +0.4 71,086 + Ac3H11_4484 0.43 +0.0 71,087 - Ac3H11_4484 0.43 +0.5 71,087 - Ac3H11_4484 0.43 +0.9 71,087 - Ac3H11_4484 0.43 +1.7 71,087 - Ac3H11_4484 0.43 +0.1 71,087 - Ac3H11_4484 0.43 +0.6 71,123 + Ac3H11_4484 0.47 +1.2 71,123 + Ac3H11_4484 0.47 +0.5 71,124 - Ac3H11_4484 0.47 +0.2 71,124 - Ac3H11_4484 0.47 +0.8 71,170 + Ac3H11_4484 0.52 +1.0 71,170 + Ac3H11_4484 0.52 +0.1 71,170 + Ac3H11_4484 0.52 -2.8 71,170 + Ac3H11_4484 0.52 -0.5 71,170 + Ac3H11_4484 0.52 -0.9 71,171 - Ac3H11_4484 0.52 +0.4 71,171 - Ac3H11_4484 0.52 -0.4 71,171 - Ac3H11_4484 0.52 -0.4 71,369 + Ac3H11_4484 0.74 +1.3 71,419 + Ac3H11_4484 0.79 -1.1 71,419 + Ac3H11_4484 0.79 -0.7 71,419 + Ac3H11_4484 0.79 +0.1 71,419 + Ac3H11_4484 0.79 -0.2 71,419 + Ac3H11_4484 0.79 -0.6 71,419 + Ac3H11_4484 0.79 +0.5 71,419 + Ac3H11_4484 0.79 +1.1 71,420 - Ac3H11_4484 0.80 +0.1 71,420 - Ac3H11_4484 0.80 +0.2 72,522 + -1.3 72,523 - +0.5 72,598 + +1.4 72,598 + -0.9 72,598 + +0.3 72,598 + -0.9 72,598 + +1.5 72,599 - -1.4 72,599 - -0.3 72,706 + +0.1 72,706 + -1.4 72,706 + -1.3 72,707 - -1.2 73,003 + Ac3H11_4486 0.18 -0.8 73,003 + Ac3H11_4486 0.18 +0.5 73,003 + Ac3H11_4486 0.18 -0.6 73,003 + Ac3H11_4486 0.18 +0.1 73,003 + Ac3H11_4486 0.18 +0.7 73,004 - Ac3H11_4486 0.18 +0.5 73,004 - Ac3H11_4486 0.18 -2.1 73,004 - Ac3H11_4486 0.18 -0.5 73,046 + Ac3H11_4486 0.20 -0.3 73,046 + Ac3H11_4486 0.20 +0.4 73,046 + Ac3H11_4486 0.20 +2.5 73,286 - Ac3H11_4486 0.30 +0.2 73,355 - Ac3H11_4486 0.33 +1.2 73,355 - Ac3H11_4486 0.33 -2.3
Or see this region's nucleotide sequence