Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_434

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_432 and Ac3H11_433 are separated by 21 nucleotidesAc3H11_433 and Ac3H11_434 are separated by 99 nucleotidesAc3H11_434 and Ac3H11_435 are separated by 281 nucleotides Ac3H11_432 - Ribonuclease HII (EC 3.1.26.4), at 118,007 to 118,555 _432 Ac3H11_433 - 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-), at 118,577 to 119,350 _433 Ac3H11_434 - hypothetical protein, at 119,450 to 120,211 _434 Ac3H11_435 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 120,493 to 121,710 _435 Position (kb) 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 118.508 kb on + strandat 118.508 kb on + strandat 118.508 kb on + strandat 118.508 kb on + strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.573 kb on - strandat 118.788 kb on - strand, within Ac3H11_433at 119.004 kb on + strand, within Ac3H11_433at 119.004 kb on + strand, within Ac3H11_433at 119.005 kb on - strand, within Ac3H11_433at 119.005 kb on - strand, within Ac3H11_433at 119.007 kb on + strand, within Ac3H11_433at 119.007 kb on + strand, within Ac3H11_433at 119.008 kb on - strand, within Ac3H11_433at 119.008 kb on - strand, within Ac3H11_433at 119.162 kb on + strand, within Ac3H11_433at 119.162 kb on + strand, within Ac3H11_433at 119.162 kb on + strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.451 kb on + strandat 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.965 kb on - strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.995 kb on - strand, within Ac3H11_434at 119.995 kb on - strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.180 kb on + strandat 120.180 kb on + strandat 120.181 kb on - strandat 120.181 kb on - strandat 120.181 kb on - strandat 120.307 kb on + strandat 120.307 kb on + strandat 120.308 kb on - strandat 120.308 kb on - strandat 120.352 kb on + strandat 120.352 kb on + strandat 120.353 kb on - strandat 120.403 kb on - strandat 120.403 kb on - strandat 120.403 kb on - strandat 120.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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118,508 + -1.4
118,508 + +0.1
118,508 + +1.6
118,508 + +1.4
118,572 + +1.0
118,572 + +1.1
118,572 + +1.1
118,573 - -0.1
118,788 - Ac3H11_433 0.27 -0.2
119,004 + Ac3H11_433 0.55 +0.1
119,004 + Ac3H11_433 0.55 -0.4
119,005 - Ac3H11_433 0.55 -0.8
119,005 - Ac3H11_433 0.55 -1.3
119,007 + Ac3H11_433 0.56 -0.1
119,007 + Ac3H11_433 0.56 -1.2
119,008 - Ac3H11_433 0.56 -1.5
119,008 - Ac3H11_433 0.56 -0.4
119,162 + Ac3H11_433 0.76 -0.7
119,162 + Ac3H11_433 0.76 +0.5
119,162 + Ac3H11_433 0.76 +1.0
119,163 - Ac3H11_433 0.76 +0.8
119,163 - Ac3H11_433 0.76 +0.0
119,163 - Ac3H11_433 0.76 +0.0
119,163 - Ac3H11_433 0.76 -0.1
119,163 - Ac3H11_433 0.76 -0.3
119,451 + +1.7
119,851 - Ac3H11_434 0.53 +1.1
119,851 - Ac3H11_434 0.53 +0.4
119,851 - Ac3H11_434 0.53 -1.3
119,851 - Ac3H11_434 0.53 -0.7
119,937 + Ac3H11_434 0.64 -1.0
119,937 + Ac3H11_434 0.64 +0.1
119,937 + Ac3H11_434 0.64 -0.1
119,937 + Ac3H11_434 0.64 +0.4
119,937 + Ac3H11_434 0.64 -0.5
119,937 + Ac3H11_434 0.64 +0.1
119,937 + Ac3H11_434 0.64 -1.7
119,938 - Ac3H11_434 0.64 -0.7
119,938 - Ac3H11_434 0.64 -1.4
119,938 - Ac3H11_434 0.64 -0.2
119,938 - Ac3H11_434 0.64 +0.1
119,938 - Ac3H11_434 0.64 -0.8
119,938 - Ac3H11_434 0.64 -2.1
119,938 - Ac3H11_434 0.64 +0.9
119,946 + Ac3H11_434 0.65 -1.3
119,946 + Ac3H11_434 0.65 -0.2
119,946 + Ac3H11_434 0.65 +1.7
119,946 + Ac3H11_434 0.65 -0.8
119,946 + Ac3H11_434 0.65 +1.4
119,946 + Ac3H11_434 0.65 -0.0
119,947 - Ac3H11_434 0.65 -1.2
119,947 - Ac3H11_434 0.65 -0.4
119,947 - Ac3H11_434 0.65 +0.4
119,947 - Ac3H11_434 0.65 +0.7
119,947 - Ac3H11_434 0.65 +0.3
119,947 - Ac3H11_434 0.65 -1.0
119,947 - Ac3H11_434 0.65 +2.2
119,947 - Ac3H11_434 0.65 -1.7
119,947 - Ac3H11_434 0.65 -0.2
119,947 - Ac3H11_434 0.65 -0.8
119,965 - Ac3H11_434 0.68 +0.8
119,994 + Ac3H11_434 0.71 +0.7
119,994 + Ac3H11_434 0.71 -0.3
119,994 + Ac3H11_434 0.71 -0.5
119,995 - Ac3H11_434 0.72 -2.9
119,995 - Ac3H11_434 0.72 +0.1
120,021 + Ac3H11_434 0.75 +1.2
120,021 + Ac3H11_434 0.75 -0.0
120,021 + Ac3H11_434 0.75 -1.3
120,021 + Ac3H11_434 0.75 -0.9
120,021 + Ac3H11_434 0.75 -0.2
120,021 + Ac3H11_434 0.75 -0.1
120,021 + Ac3H11_434 0.75 +0.1
120,021 + Ac3H11_434 0.75 +0.4
120,022 - Ac3H11_434 0.75 +1.2
120,022 - Ac3H11_434 0.75 +0.7
120,022 - Ac3H11_434 0.75 -0.9
120,022 - Ac3H11_434 0.75 +0.2
120,022 - Ac3H11_434 0.75 +0.1
120,180 + -0.5
120,180 + +0.5
120,181 - +0.7
120,181 - +0.3
120,181 - +0.1
120,307 + +0.1
120,307 + +1.3
120,308 - -0.9
120,308 - -0.9
120,352 + -0.3
120,352 + -0.9
120,353 - +0.1
120,403 - -0.5
120,403 - +0.7
120,403 - -0.6
120,528 + -0.9

Or see this region's nucleotide sequence