Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_431 and Ac3H11_432 are separated by 43 nucleotides Ac3H11_432 and Ac3H11_433 are separated by 21 nucleotides Ac3H11_433 and Ac3H11_434 are separated by 99 nucleotides
Ac3H11_431 - Lipid-A-disaccharide synthase (EC 2.4.1.182), at 116,800 to 117,963
_431
Ac3H11_432 - Ribonuclease HII (EC 3.1.26.4), at 118,007 to 118,555
_432
Ac3H11_433 - 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-), at 118,577 to 119,350
_433
Ac3H11_434 - hypothetical protein, at 119,450 to 120,211
_434
Position (kb)
118
119 Strain fitness (log2 ratio)
-1
0
1 at 118.171 kb on + strand, within Ac3H11_432 at 118.171 kb on + strand, within Ac3H11_432 at 118.172 kb on - strand, within Ac3H11_432 at 118.172 kb on - strand, within Ac3H11_432 at 118.434 kb on - strand, within Ac3H11_432 at 118.434 kb on - strand, within Ac3H11_432 at 118.434 kb on - strand, within Ac3H11_432 at 118.508 kb on + strand at 118.508 kb on + strand at 118.508 kb on + strand at 118.508 kb on + strand at 118.572 kb on + strand at 118.572 kb on + strand at 118.572 kb on + strand at 118.573 kb on - strand at 118.788 kb on - strand, within Ac3H11_433 at 119.004 kb on + strand, within Ac3H11_433 at 119.004 kb on + strand, within Ac3H11_433 at 119.005 kb on - strand, within Ac3H11_433 at 119.005 kb on - strand, within Ac3H11_433 at 119.007 kb on + strand, within Ac3H11_433 at 119.007 kb on + strand, within Ac3H11_433 at 119.008 kb on - strand, within Ac3H11_433 at 119.008 kb on - strand, within Ac3H11_433 at 119.162 kb on + strand, within Ac3H11_433 at 119.162 kb on + strand, within Ac3H11_433 at 119.162 kb on + strand, within Ac3H11_433 at 119.163 kb on - strand, within Ac3H11_433 at 119.163 kb on - strand, within Ac3H11_433 at 119.163 kb on - strand, within Ac3H11_433 at 119.163 kb on - strand, within Ac3H11_433 at 119.163 kb on - strand, within Ac3H11_433 at 119.451 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 118,171 + Ac3H11_432 0.30 +0.1 118,171 + Ac3H11_432 0.30 +0.7 118,172 - Ac3H11_432 0.30 +0.9 118,172 - Ac3H11_432 0.30 +1.5 118,434 - Ac3H11_432 0.78 +0.0 118,434 - Ac3H11_432 0.78 +0.6 118,434 - Ac3H11_432 0.78 +1.0 118,508 + -1.4 118,508 + +0.1 118,508 + +1.6 118,508 + +1.4 118,572 + +1.0 118,572 + +1.1 118,572 + +1.1 118,573 - -0.1 118,788 - Ac3H11_433 0.27 -0.2 119,004 + Ac3H11_433 0.55 +0.1 119,004 + Ac3H11_433 0.55 -0.4 119,005 - Ac3H11_433 0.55 -0.8 119,005 - Ac3H11_433 0.55 -1.3 119,007 + Ac3H11_433 0.56 -0.1 119,007 + Ac3H11_433 0.56 -1.2 119,008 - Ac3H11_433 0.56 -1.5 119,008 - Ac3H11_433 0.56 -0.4 119,162 + Ac3H11_433 0.76 -0.7 119,162 + Ac3H11_433 0.76 +0.5 119,162 + Ac3H11_433 0.76 +1.0 119,163 - Ac3H11_433 0.76 +0.8 119,163 - Ac3H11_433 0.76 +0.0 119,163 - Ac3H11_433 0.76 +0.0 119,163 - Ac3H11_433 0.76 -0.1 119,163 - Ac3H11_433 0.76 -0.3 119,451 + +1.7
Or see this region's nucleotide sequence