Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3942 and Ac3H11_3943 are separated by 93 nucleotides Ac3H11_3943 and Ac3H11_3944 are separated by 0 nucleotides
Ac3H11_3942 - Putative DMT superfamily metabolite efflux protein precursor, at 164,935 to 165,843
_3942
Ac3H11_3943 - Transcriptional regulator, AsnC family, at 165,937 to 166,425
_3943
Ac3H11_3944 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 166,426 to 167,424
_3944
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1 at 165.338 kb on + strand, within Ac3H11_3942 at 165.338 kb on + strand, within Ac3H11_3942 at 165.339 kb on - strand, within Ac3H11_3942 at 165.339 kb on - strand, within Ac3H11_3942 at 165.339 kb on - strand, within Ac3H11_3942 at 165.372 kb on - strand, within Ac3H11_3942 at 165.372 kb on - strand, within Ac3H11_3942 at 165.372 kb on - strand, within Ac3H11_3942 at 165.560 kb on + strand, within Ac3H11_3942 at 165.560 kb on + strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.597 kb on - strand, within Ac3H11_3942 at 165.819 kb on + strand at 165.819 kb on + strand at 165.819 kb on + strand at 165.820 kb on - strand at 165.847 kb on + strand at 165.850 kb on - strand at 165.953 kb on + strand at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.241 kb on - strand, within Ac3H11_3943 at 166.241 kb on - strand, within Ac3H11_3943 at 166.301 kb on - strand, within Ac3H11_3943 at 166.427 kb on + strand at 166.427 kb on + strand at 166.428 kb on - strand at 166.428 kb on - strand at 166.977 kb on - strand, within Ac3H11_3944 at 167.024 kb on + strand, within Ac3H11_3944 at 167.025 kb on - strand, within Ac3H11_3944 at 167.338 kb on + strand at 167.338 kb on + strand at 167.339 kb on - strand at 167.339 kb on - strand at 167.384 kb on + strand at 167.384 kb on + strand at 167.384 kb on + strand at 167.384 kb on + strand at 167.384 kb on + strand at 167.384 kb on + strand at 167.384 kb on + strand at 167.384 kb on + strand at 167.385 kb on - strand at 167.385 kb on - strand at 167.385 kb on - strand at 167.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 165,338 + Ac3H11_3942 0.44 -0.5 165,338 + Ac3H11_3942 0.44 -0.6 165,339 - Ac3H11_3942 0.44 +0.8 165,339 - Ac3H11_3942 0.44 -0.9 165,339 - Ac3H11_3942 0.44 +0.1 165,372 - Ac3H11_3942 0.48 -0.5 165,372 - Ac3H11_3942 0.48 +0.9 165,372 - Ac3H11_3942 0.48 -1.4 165,560 + Ac3H11_3942 0.69 +0.1 165,560 + Ac3H11_3942 0.69 +0.7 165,561 - Ac3H11_3942 0.69 -0.2 165,561 - Ac3H11_3942 0.69 +1.2 165,561 - Ac3H11_3942 0.69 -1.4 165,561 - Ac3H11_3942 0.69 -1.1 165,597 - Ac3H11_3942 0.73 +1.1 165,819 + -1.3 165,819 + -0.4 165,819 + -0.9 165,820 - -0.5 165,847 + +0.1 165,850 - +0.4 165,953 + -0.6 166,240 + Ac3H11_3943 0.62 +0.2 166,240 + Ac3H11_3943 0.62 -0.3 166,240 + Ac3H11_3943 0.62 +0.6 166,240 + Ac3H11_3943 0.62 +1.1 166,240 + Ac3H11_3943 0.62 -0.4 166,241 - Ac3H11_3943 0.62 +0.9 166,241 - Ac3H11_3943 0.62 +0.3 166,301 - Ac3H11_3943 0.74 +0.2 166,427 + -0.4 166,427 + -2.2 166,428 - -1.1 166,428 - -0.1 166,977 - Ac3H11_3944 0.55 -2.3 167,024 + Ac3H11_3944 0.60 +0.6 167,025 - Ac3H11_3944 0.60 -1.5 167,338 + +0.3 167,338 + -1.1 167,339 - -0.1 167,339 - +0.8 167,384 + +0.2 167,384 + -0.6 167,384 + +0.2 167,384 + -0.6 167,384 + -1.0 167,384 + +0.1 167,384 + -0.0 167,384 + -0.3 167,385 - -0.2 167,385 - +1.1 167,385 - -0.4 167,385 - +0.9
Or see this region's nucleotide sequence