Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3583

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3582 and Ac3H11_3583 are separated by 79 nucleotidesAc3H11_3583 and Ac3H11_3584 overlap by 4 nucleotidesAc3H11_3584 and Ac3H11_3585 are separated by 59 nucleotides Ac3H11_3582 - diguanylate cyclase (GGDEF domain), at 136,357 to 138,327 _3582 Ac3H11_3583 - hypothetical protein, at 138,407 to 138,655 _3583 Ac3H11_3584 - putative flavodoxin, at 138,652 to 139,251 _3584 Ac3H11_3585 - Permeases of the major facilitator superfamily, at 139,311 to 139,877 _3585 Position (kb) 138 139Strain fitness (log2 ratio) -2 -1 0 1 2at 137.529 kb on - strand, within Ac3H11_3582at 137.529 kb on - strand, within Ac3H11_3582at 137.529 kb on - strand, within Ac3H11_3582at 137.663 kb on + strand, within Ac3H11_3582at 137.664 kb on - strand, within Ac3H11_3582at 137.664 kb on - strand, within Ac3H11_3582at 137.664 kb on - strand, within Ac3H11_3582at 137.799 kb on - strand, within Ac3H11_3582at 138.050 kb on + strand, within Ac3H11_3582at 138.339 kb on + strandat 138.571 kb on - strand, within Ac3H11_3583at 138.843 kb on - strand, within Ac3H11_3584at 139.067 kb on + strand, within Ac3H11_3584at 139.067 kb on + strand, within Ac3H11_3584at 139.067 kb on + strand, within Ac3H11_3584at 139.067 kb on + strand, within Ac3H11_3584at 139.068 kb on - strand, within Ac3H11_3584at 139.097 kb on + strand, within Ac3H11_3584at 139.229 kb on + strandat 139.229 kb on + strandat 139.229 kb on + strandat 139.229 kb on + strandat 139.230 kb on - strandat 139.230 kb on - strandat 139.230 kb on - strandat 139.230 kb on - strandat 139.230 kb on - strandat 139.230 kb on - strandat 139.579 kb on + strand, within Ac3H11_3585

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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137,529 - Ac3H11_3582 0.59 +0.3
137,529 - Ac3H11_3582 0.59 +0.1
137,529 - Ac3H11_3582 0.59 +0.6
137,663 + Ac3H11_3582 0.66 -0.5
137,664 - Ac3H11_3582 0.66 +0.3
137,664 - Ac3H11_3582 0.66 +1.0
137,664 - Ac3H11_3582 0.66 +1.5
137,799 - Ac3H11_3582 0.73 -0.0
138,050 + Ac3H11_3582 0.86 +2.1
138,339 + +0.9
138,571 - Ac3H11_3583 0.66 +0.2
138,843 - Ac3H11_3584 0.32 +0.7
139,067 + Ac3H11_3584 0.69 -0.1
139,067 + Ac3H11_3584 0.69 -0.5
139,067 + Ac3H11_3584 0.69 +0.9
139,067 + Ac3H11_3584 0.69 -0.7
139,068 - Ac3H11_3584 0.69 +0.0
139,097 + Ac3H11_3584 0.74 +0.6
139,229 + -0.3
139,229 + +0.9
139,229 + +0.0
139,229 + +0.4
139,230 - -0.7
139,230 - -1.1
139,230 - -1.7
139,230 - -2.1
139,230 - +1.1
139,230 - +0.3
139,579 + Ac3H11_3585 0.47 +2.7

Or see this region's nucleotide sequence