Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_346

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_343 and Ac3H11_344 are separated by 88 nucleotidesAc3H11_344 and Ac3H11_345 are separated by 228 nucleotidesAc3H11_345 and Ac3H11_346 overlap by 4 nucleotidesAc3H11_346 and Ac3H11_347 are separated by 775 nucleotides Ac3H11_343 - Two-component system response regulator OmpR, at 20,606 to 21,337 _343 Ac3H11_344 - hypothetical protein, at 21,426 to 21,599 _344 Ac3H11_345 - hypothetical protein, at 21,828 to 22,223 _345 Ac3H11_346 - hypothetical protein, at 22,220 to 22,435 _346 Ac3H11_347 - probable phage replication protein NMA0782, at 23,211 to 24,197 _347 Position (kb) 22 23Strain fitness (log2 ratio) -2 -1 0 1 2 3at 21.428 kb on - strandat 21.810 kb on - strandat 22.033 kb on - strand, within Ac3H11_345at 22.059 kb on + strand, within Ac3H11_345at 22.060 kb on - strand, within Ac3H11_345at 22.325 kb on + strand, within Ac3H11_346at 22.326 kb on - strand, within Ac3H11_346at 22.356 kb on - strand, within Ac3H11_346at 22.356 kb on - strand, within Ac3H11_346at 22.356 kb on - strand, within Ac3H11_346at 22.520 kb on - strandat 22.624 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.899 kb on + strandat 23.005 kb on + strandat 23.005 kb on + strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.143 kb on + strandat 23.143 kb on + strandat 23.143 kb on + strandat 23.144 kb on - strandat 23.184 kb on + strandat 23.184 kb on + strandat 23.184 kb on + strandat 23.185 kb on - strandat 23.185 kb on - strandat 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.315 kb on - strand, within Ac3H11_347at 23.346 kb on + strand, within Ac3H11_347at 23.346 kb on + strand, within Ac3H11_347

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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21,428 - +0.7
21,810 - +2.0
22,033 - Ac3H11_345 0.52 -0.9
22,059 + Ac3H11_345 0.58 -0.9
22,060 - Ac3H11_345 0.59 -1.8
22,325 + Ac3H11_346 0.49 +0.1
22,326 - Ac3H11_346 0.49 +1.3
22,356 - Ac3H11_346 0.63 -0.3
22,356 - Ac3H11_346 0.63 -2.2
22,356 - Ac3H11_346 0.63 +0.7
22,520 - -0.1
22,624 - +0.1
22,755 - +1.0
22,755 - -0.2
22,755 - +1.4
22,755 - -1.1
22,755 - +0.8
22,755 - -0.2
22,755 - -0.9
22,755 - +0.1
22,899 + +1.7
23,005 + -0.4
23,005 + -0.0
23,006 - +0.3
23,006 - -0.0
23,006 - +0.3
23,006 - -1.2
23,006 - +1.2
23,143 + -1.3
23,143 + -1.5
23,143 + +0.5
23,144 - -0.4
23,184 + -0.9
23,184 + +0.7
23,184 + -1.0
23,185 - +0.3
23,185 - -0.3
23,314 + Ac3H11_347 0.10 -1.2
23,314 + Ac3H11_347 0.10 -0.6
23,314 + Ac3H11_347 0.10 +3.0
23,314 + Ac3H11_347 0.10 -0.3
23,314 + Ac3H11_347 0.10 -0.6
23,315 - Ac3H11_347 0.11 -0.5
23,346 + Ac3H11_347 0.14 +0.5
23,346 + Ac3H11_347 0.14 +1.4

Or see this region's nucleotide sequence