Experiment: phage 93.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_322 and Ac3H11_323 are separated by 129 nucleotides Ac3H11_323 and Ac3H11_324 are separated by 15 nucleotides Ac3H11_324 and Ac3H11_325 are separated by 460 nucleotides
Ac3H11_322 - Transcriptional regulatory protein, at 145,345 to 146,541
_322
Ac3H11_323 - hypothetical protein, at 146,671 to 146,787
_323
Ac3H11_324 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 146,803 to 149,469
_324
Ac3H11_325 - hypothetical protein, at 149,930 to 150,055
_325
Position (kb) 146
147
148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 145.822 kb on + strand, within Ac3H11_322 at 145.822 kb on + strand, within Ac3H11_322 at 145.822 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.941 kb on - strand, within Ac3H11_322 at 145.941 kb on - strand, within Ac3H11_322 at 146.384 kb on - strand, within Ac3H11_322 at 146.544 kb on + strand at 146.544 kb on + strand at 146.544 kb on + strand at 146.544 kb on + strand at 146.544 kb on + strand at 146.594 kb on + strand at 146.595 kb on - strand at 147.035 kb on - strand at 147.035 kb on - strand at 147.889 kb on + strand, within Ac3H11_324 at 147.890 kb on - strand, within Ac3H11_324 at 147.944 kb on - strand, within Ac3H11_324 at 147.944 kb on - strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.148 kb on - strand, within Ac3H11_324 at 148.148 kb on - strand, within Ac3H11_324 at 148.148 kb on - strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.623 kb on + strand, within Ac3H11_324 at 148.624 kb on - strand, within Ac3H11_324 at 148.624 kb on - strand, within Ac3H11_324 at 148.624 kb on - strand, within Ac3H11_324 at 148.669 kb on + strand, within Ac3H11_324 at 148.669 kb on + strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.696 kb on + strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.811 kb on - strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.467 kb on + strand at 149.467 kb on + strand at 149.468 kb on - strand at 149.468 kb on - strand at 149.468 kb on - strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.497 kb on - strand at 149.497 kb on - strand at 149.497 kb on - strand at 149.497 kb on - strand at 149.502 kb on + strand at 149.502 kb on + strand at 149.502 kb on + strand at 149.503 kb on - strand at 149.503 kb on - strand at 149.570 kb on + strand at 149.570 kb on + strand at 149.570 kb on + strand at 149.570 kb on + strand at 149.571 kb on - strand at 149.571 kb on - strand at 149.571 kb on - strand at 149.571 kb on - strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.824 kb on - strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.879 kb on + strand at 149.879 kb on + strand at 149.880 kb on - strand at 149.880 kb on - strand at 149.904 kb on + strand at 149.905 kb on - strand at 149.906 kb on + strand at 149.906 kb on + strand at 149.906 kb on + strand at 149.907 kb on - strand at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.957 kb on - strand, within Ac3H11_325 at 149.957 kb on - strand, within Ac3H11_325 at 149.957 kb on - strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.972 kb on + strand, within Ac3H11_325 at 149.974 kb on + strand, within Ac3H11_325 at 149.974 kb on + strand, within Ac3H11_325 at 149.975 kb on - strand, within Ac3H11_325 at 149.975 kb on - strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 150.065 kb on + strand at 150.066 kb on - strand at 150.066 kb on - strand at 150.073 kb on - strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.111 kb on - strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.227 kb on + strand at 150.293 kb on - strand at 150.293 kb on - strand at 150.293 kb on - strand at 150.303 kb on - strand at 150.303 kb on - strand at 150.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage 93.1 remove 145,822 + Ac3H11_322 0.40 +1.2 145,822 + Ac3H11_322 0.40 +0.4 145,822 + Ac3H11_322 0.40 +0.8 145,940 + Ac3H11_322 0.50 -0.4 145,940 + Ac3H11_322 0.50 -1.0 145,940 + Ac3H11_322 0.50 -0.5 145,940 + Ac3H11_322 0.50 +0.7 145,941 - Ac3H11_322 0.50 -0.1 145,941 - Ac3H11_322 0.50 -0.5 146,384 - Ac3H11_322 0.87 -1.0 146,544 + +0.3 146,544 + +0.4 146,544 + +1.0 146,544 + +1.8 146,544 + +0.2 146,594 + +0.8 146,595 - +0.2 147,035 - +0.8 147,035 - -0.8 147,889 + Ac3H11_324 0.41 +0.6 147,890 - Ac3H11_324 0.41 +0.8 147,944 - Ac3H11_324 0.43 +0.1 147,944 - Ac3H11_324 0.43 +0.3 148,147 + Ac3H11_324 0.50 +1.1 148,147 + Ac3H11_324 0.50 -0.2 148,147 + Ac3H11_324 0.50 -0.2 148,147 + Ac3H11_324 0.50 +0.4 148,147 + Ac3H11_324 0.50 -0.4 148,147 + Ac3H11_324 0.50 +1.5 148,148 - Ac3H11_324 0.50 +0.1 148,148 - Ac3H11_324 0.50 -0.6 148,148 - Ac3H11_324 0.50 -0.9 148,417 + Ac3H11_324 0.61 -1.4 148,417 + Ac3H11_324 0.61 -0.5 148,417 + Ac3H11_324 0.61 -0.5 148,417 + Ac3H11_324 0.61 -0.3 148,417 + Ac3H11_324 0.61 -0.0 148,417 + Ac3H11_324 0.61 -0.1 148,417 + Ac3H11_324 0.61 -0.2 148,418 - Ac3H11_324 0.61 -2.2 148,418 - Ac3H11_324 0.61 -0.9 148,418 - Ac3H11_324 0.61 +1.3 148,418 - Ac3H11_324 0.61 -0.2 148,418 - Ac3H11_324 0.61 -0.4 148,418 - Ac3H11_324 0.61 -0.4 148,623 + Ac3H11_324 0.68 +1.1 148,624 - Ac3H11_324 0.68 -0.1 148,624 - Ac3H11_324 0.68 -1.4 148,624 - Ac3H11_324 0.68 +0.1 148,669 + Ac3H11_324 0.70 +0.7 148,669 + Ac3H11_324 0.70 -0.2 148,670 - Ac3H11_324 0.70 -0.4 148,670 - Ac3H11_324 0.70 -0.8 148,670 - Ac3H11_324 0.70 +0.4 148,670 - Ac3H11_324 0.70 -1.0 148,696 + Ac3H11_324 0.71 -0.2 148,697 - Ac3H11_324 0.71 -0.5 148,697 - Ac3H11_324 0.71 -3.0 148,697 - Ac3H11_324 0.71 -1.0 148,697 - Ac3H11_324 0.71 -0.7 148,697 - Ac3H11_324 0.71 -1.0 148,811 - Ac3H11_324 0.75 -0.7 149,077 + Ac3H11_324 0.85 -1.7 149,077 + Ac3H11_324 0.85 +0.6 149,077 + Ac3H11_324 0.85 +0.1 149,077 + Ac3H11_324 0.85 +0.1 149,078 - Ac3H11_324 0.85 -0.6 149,078 - Ac3H11_324 0.85 -0.2 149,078 - Ac3H11_324 0.85 -0.5 149,078 - Ac3H11_324 0.85 +2.4 149,369 + -0.4 149,369 + -1.0 149,369 + -0.4 149,369 + -0.2 149,369 + -0.1 149,369 + -0.4 149,369 + +1.4 149,369 + +0.0 149,369 + -1.3 149,370 - -1.4 149,370 - +1.2 149,370 - -0.4 149,370 - -0.0 149,370 - -0.5 149,370 - -1.4 149,370 - -0.2 149,370 - -0.0 149,467 + -0.8 149,467 + -0.5 149,468 - +0.5 149,468 - -0.1 149,468 - +1.3 149,496 + +0.4 149,496 + -1.1 149,496 + +0.4 149,496 + -0.6 149,496 + -1.1 149,496 + -0.4 149,497 - +0.5 149,497 - -0.1 149,497 - +0.2 149,497 - +0.3 149,502 + -1.4 149,502 + -0.2 149,502 + -0.4 149,503 - -0.2 149,503 - -0.9 149,570 + -0.8 149,570 + +0.1 149,570 + +0.3 149,570 + -0.2 149,571 - -0.3 149,571 - -0.2 149,571 - -0.2 149,571 - -0.5 149,636 + -0.4 149,636 + -2.5 149,636 + -0.5 149,636 + -0.7 149,636 + -0.6 149,636 + -0.1 149,636 + +0.6 149,637 - -0.4 149,637 - +0.6 149,637 - -0.4 149,637 - +0.5 149,637 - -0.8 149,637 - +0.1 149,637 - +0.7 149,637 - -1.7 149,637 - +1.1 149,640 + -0.6 149,640 + -0.0 149,640 + -0.3 149,640 + -1.8 149,640 + -0.1 149,640 + +0.8 149,640 + +0.1 149,641 - -0.2 149,641 - -0.5 149,641 - -0.0 149,641 - -0.1 149,641 - -2.0 149,641 - -1.6 149,641 - -0.2 149,727 + -1.0 149,727 + -0.5 149,727 + -0.6 149,727 + +0.2 149,727 + +2.1 149,727 + -0.7 149,727 + +0.6 149,727 + -0.3 149,727 + +0.8 149,727 + -1.0 149,727 + +0.8 149,727 + +0.9 149,727 + -0.7 149,728 - -0.3 149,728 - -0.0 149,728 - -1.2 149,728 - -1.7 149,728 - +2.4 149,728 - -1.2 149,728 - +0.2 149,739 + -0.4 149,739 + +0.2 149,739 + +0.4 149,739 + +1.5 149,739 + +1.3 149,740 - +0.3 149,740 - -0.7 149,740 - -0.2 149,740 - -1.5 149,740 - +0.3 149,743 - -1.1 149,743 - -0.4 149,743 - -1.7 149,743 - -0.3 149,743 - -0.7 149,823 + +0.8 149,823 + -0.5 149,823 + -0.8 149,823 + -0.1 149,823 + -0.5 149,824 - +0.2 149,867 + -1.2 149,867 + +1.7 149,867 + -1.1 149,867 + +0.9 149,867 + -0.5 149,867 + +1.8 149,867 + +0.2 149,867 + -0.1 149,867 + -0.9 149,867 + -0.1 149,867 + -1.0 149,867 + -1.2 149,867 + +1.5 149,867 + -1.2 149,867 + -0.6 149,868 - -1.9 149,868 - +0.5 149,868 - -0.4 149,868 - +0.3 149,868 - -0.8 149,868 - +1.3 149,868 - -0.6 149,868 - +0.4 149,868 - -0.1 149,868 - +0.7 149,868 - +0.4 149,868 - -0.7 149,868 - -0.2 149,868 - -1.2 149,868 - -1.2 149,868 - -2.1 149,868 - -0.1 149,879 + +0.8 149,879 + -0.3 149,880 - -0.1 149,880 - -0.1 149,904 + +0.4 149,905 - +0.1 149,906 + -0.4 149,906 + -0.8 149,906 + +0.3 149,907 - +1.4 149,956 + Ac3H11_325 0.21 +0.7 149,956 + Ac3H11_325 0.21 +0.4 149,956 + Ac3H11_325 0.21 -1.6 149,956 + Ac3H11_325 0.21 -0.6 149,956 + Ac3H11_325 0.21 -0.3 149,957 - Ac3H11_325 0.21 +0.7 149,957 - Ac3H11_325 0.21 +1.0 149,957 - Ac3H11_325 0.21 -0.8 149,960 + Ac3H11_325 0.24 -0.9 149,960 + Ac3H11_325 0.24 -0.3 149,960 + Ac3H11_325 0.24 +0.6 149,960 + Ac3H11_325 0.24 +2.5 149,960 + Ac3H11_325 0.24 -2.4 149,961 - Ac3H11_325 0.25 +1.3 149,961 - Ac3H11_325 0.25 +0.8 149,961 - Ac3H11_325 0.25 +0.3 149,961 - Ac3H11_325 0.25 +0.6 149,972 + Ac3H11_325 0.33 +0.9 149,974 + Ac3H11_325 0.35 -0.8 149,974 + Ac3H11_325 0.35 +0.7 149,975 - Ac3H11_325 0.36 -0.0 149,975 - Ac3H11_325 0.36 -2.4 149,985 + Ac3H11_325 0.44 +1.5 149,985 + Ac3H11_325 0.44 +0.1 149,985 + Ac3H11_325 0.44 -0.1 149,985 + Ac3H11_325 0.44 +1.5 149,986 - Ac3H11_325 0.44 -0.3 149,986 - Ac3H11_325 0.44 -0.5 149,986 - Ac3H11_325 0.44 +0.2 149,986 - Ac3H11_325 0.44 -0.0 149,986 - Ac3H11_325 0.44 +0.9 150,065 + +0.1 150,066 - +0.1 150,066 - +0.4 150,073 - +0.4 150,085 + +0.8 150,085 + -0.7 150,085 + +0.7 150,085 + -0.4 150,085 + +0.2 150,085 + +0.7 150,085 + +0.4 150,085 + -0.4 150,085 + -0.1 150,086 - -0.5 150,086 - +1.0 150,086 - +1.0 150,086 - +0.2 150,086 - -0.4 150,086 - +0.1 150,086 - +0.7 150,086 - +0.6 150,111 - -0.6 150,212 + -0.9 150,212 + -0.7 150,212 + -0.3 150,212 + +0.3 150,212 + +1.0 150,212 + -0.8 150,212 + -0.0 150,212 + -1.4 150,213 - -1.1 150,213 - -0.2 150,213 - -0.2 150,213 - -1.2 150,213 - +1.1 150,227 + +0.6 150,293 - -0.4 150,293 - -0.1 150,293 - -1.9 150,303 - -1.1 150,303 - -0.7 150,303 - -0.7
Or see this region's nucleotide sequence