Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_321

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_319 and Ac3H11_320 overlap by 4 nucleotidesAc3H11_320 and Ac3H11_321 overlap by 29 nucleotidesAc3H11_321 and Ac3H11_322 are separated by 54 nucleotides Ac3H11_319 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 143,449 to 144,462 _319 Ac3H11_320 - AttE component of AttEFGH ABC transport system, at 144,459 to 145,112 _320 Ac3H11_321 - hypothetical protein, at 145,084 to 145,290 _321 Ac3H11_322 - Transcriptional regulatory protein, at 145,345 to 146,541 _322 Position (kb) 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 144.495 kb on + strandat 144.495 kb on + strandat 144.495 kb on + strandat 144.495 kb on + strandat 144.617 kb on + strand, within Ac3H11_320at 144.617 kb on + strand, within Ac3H11_320at 144.618 kb on - strand, within Ac3H11_320at 144.830 kb on - strand, within Ac3H11_320at 145.152 kb on - strand, within Ac3H11_321at 145.259 kb on + strand, within Ac3H11_321at 145.259 kb on + strand, within Ac3H11_321at 145.260 kb on - strand, within Ac3H11_321at 145.260 kb on - strand, within Ac3H11_321at 145.260 kb on - strand, within Ac3H11_321at 145.260 kb on - strand, within Ac3H11_321at 145.295 kb on - strandat 145.295 kb on - strandat 145.295 kb on - strandat 145.295 kb on - strandat 145.295 kb on - strandat 145.363 kb on + strandat 145.363 kb on + strandat 145.363 kb on + strandat 145.364 kb on - strandat 145.600 kb on + strand, within Ac3H11_322at 145.600 kb on + strand, within Ac3H11_322at 145.675 kb on + strand, within Ac3H11_322at 145.741 kb on + strand, within Ac3H11_322at 145.741 kb on + strand, within Ac3H11_322at 145.741 kb on + strandat 145.741 kb on + strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.742 kb on - strand, within Ac3H11_322at 145.822 kb on + strand, within Ac3H11_322at 145.822 kb on + strand, within Ac3H11_322at 145.822 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.940 kb on + strand, within Ac3H11_322at 145.941 kb on - strand, within Ac3H11_322at 145.941 kb on - strand, within Ac3H11_322

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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144,495 + +0.9
144,495 + +0.8
144,495 + +1.8
144,495 + -0.3
144,617 + Ac3H11_320 0.24 -0.6
144,617 + Ac3H11_320 0.24 -0.4
144,618 - Ac3H11_320 0.24 -0.9
144,830 - Ac3H11_320 0.57 -1.7
145,152 - Ac3H11_321 0.33 +0.9
145,259 + Ac3H11_321 0.85 -0.3
145,259 + Ac3H11_321 0.85 +1.1
145,260 - Ac3H11_321 0.85 +0.4
145,260 - Ac3H11_321 0.85 +0.3
145,260 - Ac3H11_321 0.85 -0.7
145,260 - Ac3H11_321 0.85 -1.3
145,295 - +1.3
145,295 - +1.4
145,295 - +0.4
145,295 - -1.7
145,295 - +0.4
145,363 + -1.4
145,363 + -0.7
145,363 + -0.5
145,364 - +0.4
145,600 + Ac3H11_322 0.21 +1.1
145,600 + Ac3H11_322 0.21 -1.3
145,675 + Ac3H11_322 0.28 +0.6
145,741 + Ac3H11_322 0.33 -0.6
145,741 + Ac3H11_322 0.33 -0.8
145,741 + +1.1
145,741 + Ac3H11_322 0.33 -0.3
145,742 - Ac3H11_322 0.33 -0.8
145,742 - Ac3H11_322 0.33 +1.7
145,742 - Ac3H11_322 0.33 -2.4
145,742 - Ac3H11_322 0.33 +0.1
145,742 - Ac3H11_322 0.33 +0.1
145,742 - Ac3H11_322 0.33 +0.1
145,742 - Ac3H11_322 0.33 +0.5
145,742 - Ac3H11_322 0.33 +0.1
145,742 - Ac3H11_322 0.33 -0.4
145,742 - Ac3H11_322 0.33 +1.5
145,822 + Ac3H11_322 0.40 +1.2
145,822 + Ac3H11_322 0.40 +0.4
145,822 + Ac3H11_322 0.40 +0.8
145,940 + Ac3H11_322 0.50 -0.4
145,940 + Ac3H11_322 0.50 -1.0
145,940 + Ac3H11_322 0.50 -0.5
145,940 + Ac3H11_322 0.50 +0.7
145,941 - Ac3H11_322 0.50 -0.1
145,941 - Ac3H11_322 0.50 -0.5

Or see this region's nucleotide sequence