Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2736

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2734 and Ac3H11_2735 are separated by 1 nucleotidesAc3H11_2735 and Ac3H11_2736 are separated by 111 nucleotidesAc3H11_2736 and Ac3H11_2737 are separated by 67 nucleotides Ac3H11_2734 - Dihydroneopterin aldolase (EC 4.1.2.25), at 1,035,054 to 1,035,482 _2734 Ac3H11_2735 - FolM Alternative dihydrofolate reductase 1, at 1,035,484 to 1,036,209 _2735 Ac3H11_2736 - Glutathione S-transferase (EC 2.5.1.18), at 1,036,321 to 1,036,899 _2736 Ac3H11_2737 - putative inner membrane efflux protein, at 1,036,967 to 1,038,145 _2737 Position (kb) 1036 1037Strain fitness (log2 ratio) -2 -1 0 1 2at 1035.343 kb on + strand, within Ac3H11_2734at 1035.344 kb on - strand, within Ac3H11_2734at 1035.344 kb on - strand, within Ac3H11_2734at 1035.360 kb on - strand, within Ac3H11_2734at 1035.360 kb on - strand, within Ac3H11_2734at 1035.360 kb on - strand, within Ac3H11_2734at 1035.728 kb on - strand, within Ac3H11_2735at 1035.801 kb on - strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.890 kb on + strand, within Ac3H11_2735at 1035.891 kb on - strand, within Ac3H11_2735at 1035.891 kb on - strand, within Ac3H11_2735at 1035.892 kb on + strand, within Ac3H11_2735at 1035.893 kb on - strand, within Ac3H11_2735at 1035.893 kb on - strand, within Ac3H11_2735at 1036.376 kb on + strandat 1036.376 kb on + strandat 1036.475 kb on + strand, within Ac3H11_2736at 1036.476 kb on - strand, within Ac3H11_2736at 1036.574 kb on + strand, within Ac3H11_2736at 1036.574 kb on + strand, within Ac3H11_2736at 1036.575 kb on - strand, within Ac3H11_2736at 1036.575 kb on - strand, within Ac3H11_2736at 1036.622 kb on + strand, within Ac3H11_2736at 1036.622 kb on + strand, within Ac3H11_2736at 1036.622 kb on + strand, within Ac3H11_2736at 1036.688 kb on + strand, within Ac3H11_2736at 1036.688 kb on + strand, within Ac3H11_2736at 1036.688 kb on + strand, within Ac3H11_2736at 1036.688 kb on + strand, within Ac3H11_2736at 1036.803 kb on - strand, within Ac3H11_2736at 1036.886 kb on + strandat 1036.887 kb on - strandat 1036.920 kb on + strandat 1037.219 kb on + strand, within Ac3H11_2737at 1037.219 kb on + strand, within Ac3H11_2737at 1037.220 kb on - strand, within Ac3H11_2737at 1037.220 kb on - strand, within Ac3H11_2737at 1037.268 kb on + strand, within Ac3H11_2737at 1037.382 kb on + strand, within Ac3H11_2737at 1037.382 kb on + strand, within Ac3H11_2737at 1037.383 kb on - strand, within Ac3H11_2737at 1037.549 kb on - strand, within Ac3H11_2737

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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1,035,343 + Ac3H11_2734 0.67 +1.7
1,035,344 - Ac3H11_2734 0.68 -2.6
1,035,344 - Ac3H11_2734 0.68 +0.4
1,035,360 - Ac3H11_2734 0.71 -1.1
1,035,360 - Ac3H11_2734 0.71 +1.5
1,035,360 - Ac3H11_2734 0.71 +0.1
1,035,728 - Ac3H11_2735 0.34 +1.7
1,035,801 - Ac3H11_2735 0.44 +0.0
1,035,890 + Ac3H11_2735 0.56 -0.3
1,035,890 + Ac3H11_2735 0.56 +0.4
1,035,890 + Ac3H11_2735 0.56 +0.2
1,035,890 + Ac3H11_2735 0.56 -1.4
1,035,891 - Ac3H11_2735 0.56 -1.3
1,035,891 - Ac3H11_2735 0.56 -0.9
1,035,892 + Ac3H11_2735 0.56 -0.5
1,035,893 - Ac3H11_2735 0.56 -0.6
1,035,893 - Ac3H11_2735 0.56 +0.2
1,036,376 + -0.6
1,036,376 + -0.6
1,036,475 + Ac3H11_2736 0.27 -0.4
1,036,476 - Ac3H11_2736 0.27 -1.0
1,036,574 + Ac3H11_2736 0.44 +0.0
1,036,574 + Ac3H11_2736 0.44 +2.7
1,036,575 - Ac3H11_2736 0.44 +0.7
1,036,575 - Ac3H11_2736 0.44 +1.4
1,036,622 + Ac3H11_2736 0.52 -0.0
1,036,622 + Ac3H11_2736 0.52 -0.9
1,036,622 + Ac3H11_2736 0.52 +0.4
1,036,688 + Ac3H11_2736 0.63 +0.8
1,036,688 + Ac3H11_2736 0.63 +2.3
1,036,688 + Ac3H11_2736 0.63 +1.4
1,036,688 + Ac3H11_2736 0.63 -0.5
1,036,803 - Ac3H11_2736 0.83 -0.4
1,036,886 + +0.1
1,036,887 - -0.1
1,036,920 + +0.5
1,037,219 + Ac3H11_2737 0.21 +0.7
1,037,219 + Ac3H11_2737 0.21 +0.2
1,037,220 - Ac3H11_2737 0.21 +0.8
1,037,220 - Ac3H11_2737 0.21 -0.6
1,037,268 + Ac3H11_2737 0.26 -1.3
1,037,382 + Ac3H11_2737 0.35 -0.5
1,037,382 + Ac3H11_2737 0.35 +1.7
1,037,383 - Ac3H11_2737 0.35 +1.7
1,037,549 - Ac3H11_2737 0.49 -0.1

Or see this region's nucleotide sequence