Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2430

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2429 and Ac3H11_2430 are separated by 223 nucleotidesAc3H11_2430 and Ac3H11_2431 are separated by 362 nucleotides Ac3H11_2429 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 687,443 to 688,453 _2429 Ac3H11_2430 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 688,677 to 689,648 _2430 Ac3H11_2431 - ABC transporter ATP-binding protein, at 690,011 to 691,555 _2431 Position (kb) 688 689 690Strain fitness (log2 ratio) -2 -1 0 1 2at 687.678 kb on - strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 688.094 kb on + strand, within Ac3H11_2429at 688.094 kb on + strand, within Ac3H11_2429at 688.094 kb on + strand, within Ac3H11_2429at 688.095 kb on - strand, within Ac3H11_2429at 688.179 kb on - strand, within Ac3H11_2429at 688.436 kb on - strandat 688.452 kb on - strandat 688.503 kb on - strandat 688.503 kb on - strandat 688.511 kb on + strandat 688.512 kb on - strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.670 kb on + strandat 688.670 kb on + strandat 688.670 kb on + strandat 688.671 kb on - strandat 688.707 kb on + strandat 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.154 kb on + strand, within Ac3H11_2430at 689.154 kb on + strand, within Ac3H11_2430at 689.243 kb on + strand, within Ac3H11_2430at 689.434 kb on - strand, within Ac3H11_2430at 689.434 kb on - strand, within Ac3H11_2430at 689.461 kb on + strand, within Ac3H11_2430at 689.461 kb on + strand, within Ac3H11_2430at 689.462 kb on - strand, within Ac3H11_2430at 689.462 kb on - strand, within Ac3H11_2430at 689.517 kb on + strand, within Ac3H11_2430at 689.518 kb on - strand, within Ac3H11_2430at 689.518 kb on - strand, within Ac3H11_2430at 689.686 kb on + strandat 689.686 kb on + strandat 689.686 kb on + strandat 689.687 kb on - strandat 689.754 kb on + strandat 689.754 kb on + strandat 689.755 kb on - strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.010 kb on + strandat 690.011 kb on - strandat 690.011 kb on - strandat 690.011 kb on - strandat 690.011 kb on - strandat 690.021 kb on + strandat 690.021 kb on + strandat 690.021 kb on + strandat 690.022 kb on - strandat 690.022 kb on - strandat 690.022 kb on - strandat 690.022 kb on - strandat 690.170 kb on + strand, within Ac3H11_2431at 690.171 kb on - strand, within Ac3H11_2431at 690.171 kb on - strand, within Ac3H11_2431at 690.171 kb on - strand, within Ac3H11_2431

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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687,678 - Ac3H11_2429 0.23 +0.3
687,848 + Ac3H11_2429 0.40 -2.3
687,848 + Ac3H11_2429 0.40 +0.7
687,848 + Ac3H11_2429 0.40 +0.2
687,848 + Ac3H11_2429 0.40 -0.1
687,848 + Ac3H11_2429 0.40 +0.0
687,848 + Ac3H11_2429 0.40 -0.2
687,848 + Ac3H11_2429 0.40 -2.1
687,849 - Ac3H11_2429 0.40 +0.5
687,849 - Ac3H11_2429 0.40 +0.9
687,849 - Ac3H11_2429 0.40 +2.6
687,849 - Ac3H11_2429 0.40 -0.2
687,849 - Ac3H11_2429 0.40 -0.1
687,849 - Ac3H11_2429 0.40 -1.0
687,849 - Ac3H11_2429 0.40 +1.2
687,849 - Ac3H11_2429 0.40 -0.1
687,849 - Ac3H11_2429 0.40 +0.7
687,849 - Ac3H11_2429 0.40 +0.0
687,849 - Ac3H11_2429 0.40 -2.4
687,849 - Ac3H11_2429 0.40 +0.0
687,849 - Ac3H11_2429 0.40 +0.3
687,849 - Ac3H11_2429 0.40 +0.5
687,849 - Ac3H11_2429 0.40 -0.4
688,094 + Ac3H11_2429 0.64 +0.7
688,094 + Ac3H11_2429 0.64 -0.7
688,094 + Ac3H11_2429 0.64 +2.6
688,095 - Ac3H11_2429 0.64 +0.7
688,179 - Ac3H11_2429 0.73 +0.4
688,436 - +0.7
688,452 - -0.1
688,503 - +0.6
688,503 - +1.2
688,511 + +0.3
688,512 - -0.1
688,600 + -0.4
688,600 + +0.8
688,600 + +1.1
688,600 + +0.2
688,600 + +0.1
688,600 + +1.5
688,601 - -2.4
688,601 - -0.7
688,601 - -0.0
688,601 - +2.1
688,601 - -0.8
688,670 + +0.3
688,670 + +0.4
688,670 + -0.8
688,671 - -0.7
688,707 + -1.5
689,112 + Ac3H11_2430 0.45 -1.2
689,112 + Ac3H11_2430 0.45 -0.9
689,112 + Ac3H11_2430 0.45 +0.2
689,112 + Ac3H11_2430 0.45 -0.4
689,112 + Ac3H11_2430 0.45 -0.1
689,113 - Ac3H11_2430 0.45 -0.7
689,113 - Ac3H11_2430 0.45 -0.9
689,113 - Ac3H11_2430 0.45 +0.2
689,154 + Ac3H11_2430 0.49 -0.3
689,154 + Ac3H11_2430 0.49 -0.6
689,243 + Ac3H11_2430 0.58 +0.1
689,434 - Ac3H11_2430 0.78 +0.7
689,434 - Ac3H11_2430 0.78 +0.4
689,461 + Ac3H11_2430 0.81 -0.6
689,461 + Ac3H11_2430 0.81 -0.5
689,462 - Ac3H11_2430 0.81 -0.6
689,462 - Ac3H11_2430 0.81 -0.9
689,517 + Ac3H11_2430 0.86 +0.8
689,518 - Ac3H11_2430 0.87 +1.1
689,518 - Ac3H11_2430 0.87 -1.7
689,686 + +0.5
689,686 + +0.1
689,686 + -1.3
689,687 - -0.4
689,754 + +1.4
689,754 + +0.5
689,755 - -1.9
690,010 + +1.5
690,010 + +0.1
690,010 + +1.5
690,010 + -0.0
690,010 + +0.3
690,011 - +1.5
690,011 - +0.8
690,011 - +0.2
690,011 - -0.7
690,021 + +0.6
690,021 + +0.1
690,021 + +0.8
690,022 - -0.5
690,022 - +0.6
690,022 - -1.5
690,022 - -0.7
690,170 + Ac3H11_2431 0.10 +1.3
690,171 - Ac3H11_2431 0.10 -0.9
690,171 - Ac3H11_2431 0.10 -1.8
690,171 - Ac3H11_2431 0.10 +1.0

Or see this region's nucleotide sequence