Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2429

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2427 and Ac3H11_2428 are separated by 77 nucleotidesAc3H11_2428 and Ac3H11_2429 are separated by 223 nucleotidesAc3H11_2429 and Ac3H11_2430 are separated by 223 nucleotides Ac3H11_2427 - Threonine dehydratase, catabolic (EC 4.3.1.19), at 685,508 to 686,512 _2427 Ac3H11_2428 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 686,590 to 687,219 _2428 Ac3H11_2429 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 687,443 to 688,453 _2429 Ac3H11_2430 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 688,677 to 689,648 _2430 Position (kb) 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 686.510 kb on + strandat 686.510 kb on + strandat 686.511 kb on - strandat 686.511 kb on - strandat 686.525 kb on + strandat 686.713 kb on + strand, within Ac3H11_2428at 686.713 kb on + strand, within Ac3H11_2428at 686.713 kb on + strand, within Ac3H11_2428at 686.714 kb on - strand, within Ac3H11_2428at 686.929 kb on + strand, within Ac3H11_2428at 686.929 kb on + strand, within Ac3H11_2428at 686.929 kb on + strand, within Ac3H11_2428at 686.929 kb on + strand, within Ac3H11_2428at 686.929 kb on + strand, within Ac3H11_2428at 686.930 kb on - strand, within Ac3H11_2428at 686.930 kb on - strand, within Ac3H11_2428at 686.932 kb on + strand, within Ac3H11_2428at 686.933 kb on - strand, within Ac3H11_2428at 686.933 kb on - strand, within Ac3H11_2428at 687.039 kb on + strand, within Ac3H11_2428at 687.166 kb on + strandat 687.167 kb on - strandat 687.167 kb on - strandat 687.167 kb on - strandat 687.167 kb on - strandat 687.167 kb on - strandat 687.217 kb on + strandat 687.217 kb on + strandat 687.217 kb on + strandat 687.218 kb on - strandat 687.218 kb on - strandat 687.375 kb on - strandat 687.375 kb on - strandat 687.563 kb on + strand, within Ac3H11_2429at 687.563 kb on + strand, within Ac3H11_2429at 687.564 kb on - strand, within Ac3H11_2429at 687.564 kb on - strand, within Ac3H11_2429at 687.644 kb on + strand, within Ac3H11_2429at 687.644 kb on + strand, within Ac3H11_2429at 687.645 kb on - strand, within Ac3H11_2429at 687.645 kb on - strand, within Ac3H11_2429at 687.645 kb on - strand, within Ac3H11_2429at 687.645 kb on - strand, within Ac3H11_2429at 687.645 kb on - strand, within Ac3H11_2429at 687.678 kb on - strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.848 kb on + strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 687.849 kb on - strand, within Ac3H11_2429at 688.094 kb on + strand, within Ac3H11_2429at 688.094 kb on + strand, within Ac3H11_2429at 688.094 kb on + strand, within Ac3H11_2429at 688.095 kb on - strand, within Ac3H11_2429at 688.179 kb on - strand, within Ac3H11_2429at 688.436 kb on - strandat 688.452 kb on - strandat 688.503 kb on - strandat 688.503 kb on - strandat 688.511 kb on + strandat 688.512 kb on - strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.600 kb on + strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.601 kb on - strandat 688.670 kb on + strandat 688.670 kb on + strandat 688.670 kb on + strandat 688.671 kb on - strandat 688.707 kb on + strandat 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.112 kb on + strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.113 kb on - strand, within Ac3H11_2430at 689.154 kb on + strand, within Ac3H11_2430at 689.154 kb on + strand, within Ac3H11_2430at 689.243 kb on + strand, within Ac3H11_2430at 689.434 kb on - strand, within Ac3H11_2430at 689.434 kb on - strand, within Ac3H11_2430

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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686,510 + +2.5
686,510 + -0.5
686,511 - -1.1
686,511 - -0.4
686,525 + +0.2
686,713 + Ac3H11_2428 0.20 +0.3
686,713 + Ac3H11_2428 0.20 -0.9
686,713 + Ac3H11_2428 0.20 -1.5
686,714 - Ac3H11_2428 0.20 -0.5
686,929 + Ac3H11_2428 0.54 -1.5
686,929 + Ac3H11_2428 0.54 -3.0
686,929 + Ac3H11_2428 0.54 -0.5
686,929 + Ac3H11_2428 0.54 -0.7
686,929 + Ac3H11_2428 0.54 +2.1
686,930 - Ac3H11_2428 0.54 +0.0
686,930 - Ac3H11_2428 0.54 +0.6
686,932 + Ac3H11_2428 0.54 +0.2
686,933 - Ac3H11_2428 0.54 -0.5
686,933 - Ac3H11_2428 0.54 -0.8
687,039 + Ac3H11_2428 0.71 -0.4
687,166 + -0.3
687,167 - +0.5
687,167 - -1.0
687,167 - +2.0
687,167 - +1.1
687,167 - -1.9
687,217 + -0.0
687,217 + -0.7
687,217 + +0.8
687,218 - -1.6
687,218 - +0.1
687,375 - +0.7
687,375 - +1.5
687,563 + Ac3H11_2429 0.12 -0.5
687,563 + Ac3H11_2429 0.12 -0.1
687,564 - Ac3H11_2429 0.12 -0.2
687,564 - Ac3H11_2429 0.12 +0.0
687,644 + Ac3H11_2429 0.20 -2.1
687,644 + Ac3H11_2429 0.20 -0.7
687,645 - Ac3H11_2429 0.20 -1.2
687,645 - Ac3H11_2429 0.20 +0.6
687,645 - Ac3H11_2429 0.20 +0.4
687,645 - Ac3H11_2429 0.20 +0.0
687,645 - Ac3H11_2429 0.20 -1.7
687,678 - Ac3H11_2429 0.23 +0.3
687,848 + Ac3H11_2429 0.40 -2.3
687,848 + Ac3H11_2429 0.40 +0.7
687,848 + Ac3H11_2429 0.40 +0.2
687,848 + Ac3H11_2429 0.40 -0.1
687,848 + Ac3H11_2429 0.40 +0.0
687,848 + Ac3H11_2429 0.40 -0.2
687,848 + Ac3H11_2429 0.40 -2.1
687,849 - Ac3H11_2429 0.40 +0.5
687,849 - Ac3H11_2429 0.40 +0.9
687,849 - Ac3H11_2429 0.40 +2.6
687,849 - Ac3H11_2429 0.40 -0.2
687,849 - Ac3H11_2429 0.40 -0.1
687,849 - Ac3H11_2429 0.40 -1.0
687,849 - Ac3H11_2429 0.40 +1.2
687,849 - Ac3H11_2429 0.40 -0.1
687,849 - Ac3H11_2429 0.40 +0.7
687,849 - Ac3H11_2429 0.40 +0.0
687,849 - Ac3H11_2429 0.40 -2.4
687,849 - Ac3H11_2429 0.40 +0.0
687,849 - Ac3H11_2429 0.40 +0.3
687,849 - Ac3H11_2429 0.40 +0.5
687,849 - Ac3H11_2429 0.40 -0.4
688,094 + Ac3H11_2429 0.64 +0.7
688,094 + Ac3H11_2429 0.64 -0.7
688,094 + Ac3H11_2429 0.64 +2.6
688,095 - Ac3H11_2429 0.64 +0.7
688,179 - Ac3H11_2429 0.73 +0.4
688,436 - +0.7
688,452 - -0.1
688,503 - +0.6
688,503 - +1.2
688,511 + +0.3
688,512 - -0.1
688,600 + -0.4
688,600 + +0.8
688,600 + +1.1
688,600 + +0.2
688,600 + +0.1
688,600 + +1.5
688,601 - -2.4
688,601 - -0.7
688,601 - -0.0
688,601 - +2.1
688,601 - -0.8
688,670 + +0.3
688,670 + +0.4
688,670 + -0.8
688,671 - -0.7
688,707 + -1.5
689,112 + Ac3H11_2430 0.45 -1.2
689,112 + Ac3H11_2430 0.45 -0.9
689,112 + Ac3H11_2430 0.45 +0.2
689,112 + Ac3H11_2430 0.45 -0.4
689,112 + Ac3H11_2430 0.45 -0.1
689,113 - Ac3H11_2430 0.45 -0.7
689,113 - Ac3H11_2430 0.45 -0.9
689,113 - Ac3H11_2430 0.45 +0.2
689,154 + Ac3H11_2430 0.49 -0.3
689,154 + Ac3H11_2430 0.49 -0.6
689,243 + Ac3H11_2430 0.58 +0.1
689,434 - Ac3H11_2430 0.78 +0.7
689,434 - Ac3H11_2430 0.78 +0.4

Or see this region's nucleotide sequence