Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_182

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_181 and Ac3H11_182 are separated by 144 nucleotidesAc3H11_182 and Ac3H11_183 are separated by 301 nucleotides Ac3H11_181 - FIG00538743: hypothetical protein, at 69,380 to 70,156 _181 Ac3H11_182 - hypothetical protein, at 70,301 to 70,789 _182 Ac3H11_183 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 71,091 to 74,063 _183 Position (kb) 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 69.333 kb on - strandat 69.874 kb on - strand, within Ac3H11_181at 69.874 kb on - strand, within Ac3H11_181at 69.874 kb on - strand, within Ac3H11_181at 69.874 kb on - strand, within Ac3H11_181at 70.073 kb on + strand, within Ac3H11_181at 70.083 kb on + strandat 70.083 kb on + strandat 70.157 kb on - strandat 70.170 kb on + strandat 70.170 kb on + strandat 70.170 kb on + strandat 70.506 kb on + strand, within Ac3H11_182at 70.506 kb on + strand, within Ac3H11_182at 70.506 kb on + strand, within Ac3H11_182at 70.506 kb on + strand, within Ac3H11_182at 70.507 kb on - strand, within Ac3H11_182at 70.507 kb on - strand, within Ac3H11_182at 70.507 kb on - strand, within Ac3H11_182at 70.531 kb on - strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.578 kb on + strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.579 kb on - strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.584 kb on + strand, within Ac3H11_182at 70.585 kb on - strand, within Ac3H11_182at 70.585 kb on - strand, within Ac3H11_182at 70.585 kb on - strand, within Ac3H11_182at 70.686 kb on + strand, within Ac3H11_182at 70.686 kb on + strand, within Ac3H11_182at 70.687 kb on - strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strandat 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.728 kb on + strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.729 kb on - strand, within Ac3H11_182at 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.828 kb on + strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.829 kb on - strandat 70.942 kb on + strandat 71.004 kb on - strandat 71.161 kb on + strandat 71.162 kb on - strandat 71.162 kb on - strandat 71.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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69,333 - -0.2
69,874 - Ac3H11_181 0.64 -1.0
69,874 - Ac3H11_181 0.64 +1.6
69,874 - Ac3H11_181 0.64 -0.9
69,874 - Ac3H11_181 0.64 +0.6
70,073 + Ac3H11_181 0.89 -0.4
70,083 + -0.1
70,083 + -1.4
70,157 - +0.1
70,170 + -0.8
70,170 + -0.9
70,170 + -0.3
70,506 + Ac3H11_182 0.42 +0.9
70,506 + Ac3H11_182 0.42 +0.7
70,506 + Ac3H11_182 0.42 -0.0
70,506 + Ac3H11_182 0.42 +0.8
70,507 - Ac3H11_182 0.42 -2.5
70,507 - Ac3H11_182 0.42 -0.8
70,507 - Ac3H11_182 0.42 -1.2
70,531 - Ac3H11_182 0.47 +1.1
70,578 + Ac3H11_182 0.57 +0.7
70,578 + Ac3H11_182 0.57 -0.1
70,578 + Ac3H11_182 0.57 +0.1
70,578 + Ac3H11_182 0.57 -0.7
70,578 + Ac3H11_182 0.57 -1.4
70,578 + Ac3H11_182 0.57 -0.7
70,578 + Ac3H11_182 0.57 -0.0
70,578 + Ac3H11_182 0.57 +1.3
70,578 + Ac3H11_182 0.57 -2.3
70,578 + Ac3H11_182 0.57 -0.1
70,578 + Ac3H11_182 0.57 +0.1
70,578 + Ac3H11_182 0.57 -0.7
70,579 - Ac3H11_182 0.57 +0.5
70,579 - Ac3H11_182 0.57 -0.2
70,579 - Ac3H11_182 0.57 +0.8
70,579 - Ac3H11_182 0.57 +1.8
70,579 - Ac3H11_182 0.57 -0.4
70,579 - Ac3H11_182 0.57 +0.2
70,579 - Ac3H11_182 0.57 -0.7
70,579 - Ac3H11_182 0.57 +0.3
70,579 - Ac3H11_182 0.57 +0.6
70,579 - Ac3H11_182 0.57 -1.2
70,579 - Ac3H11_182 0.57 -1.1
70,579 - Ac3H11_182 0.57 +0.3
70,579 - Ac3H11_182 0.57 +0.3
70,584 + Ac3H11_182 0.58 +0.6
70,584 + Ac3H11_182 0.58 +0.2
70,584 + Ac3H11_182 0.58 +0.9
70,584 + Ac3H11_182 0.58 -2.6
70,584 + Ac3H11_182 0.58 +1.6
70,584 + Ac3H11_182 0.58 +0.2
70,585 - Ac3H11_182 0.58 +1.6
70,585 - Ac3H11_182 0.58 -1.3
70,585 - Ac3H11_182 0.58 -0.2
70,686 + Ac3H11_182 0.79 +0.6
70,686 + Ac3H11_182 0.79 -1.2
70,687 - Ac3H11_182 0.79 +0.6
70,728 + Ac3H11_182 0.87 -0.2
70,728 + Ac3H11_182 0.87 +0.3
70,728 + -0.9
70,728 + Ac3H11_182 0.87 +0.1
70,728 + Ac3H11_182 0.87 +0.1
70,728 + Ac3H11_182 0.87 +0.1
70,728 + Ac3H11_182 0.87 +0.5
70,728 + Ac3H11_182 0.87 +0.3
70,728 + Ac3H11_182 0.87 +0.4
70,729 - Ac3H11_182 0.88 -0.7
70,729 - Ac3H11_182 0.88 +0.1
70,729 - Ac3H11_182 0.88 -0.1
70,729 - Ac3H11_182 0.88 +0.2
70,729 - Ac3H11_182 0.88 -0.4
70,729 - Ac3H11_182 0.88 +0.6
70,729 - Ac3H11_182 0.88 +0.5
70,828 + +0.3
70,828 + -0.3
70,828 + -0.3
70,828 + -0.7
70,828 + -0.5
70,828 + -0.9
70,828 + -0.7
70,828 + -0.1
70,828 + +1.2
70,828 + +0.1
70,828 + +0.7
70,829 - +0.4
70,829 - +1.3
70,829 - -1.8
70,829 - +0.7
70,829 - +0.3
70,829 - +0.5
70,829 - -1.2
70,829 - +0.2
70,829 - +0.4
70,829 - +0.3
70,829 - -1.2
70,942 + -1.2
71,004 - -1.1
71,161 + +2.0
71,162 - +0.7
71,162 - -1.9
71,380 + -0.5

Or see this region's nucleotide sequence