Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1390

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1389 and Ac3H11_1390 are separated by 466 nucleotidesAc3H11_1390 and Ac3H11_1391 are separated by 5 nucleotides Ac3H11_1389 - Flagellar motor rotation protein MotA, at 77,758 to 78,540 _1389 Ac3H11_1390 - Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33), at 79,007 to 79,777 _1390 Ac3H11_1391 - Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45), at 79,783 to 80,850 _1391 Position (kb) 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 78.227 kb on + strand, within Ac3H11_1389at 78.227 kb on + strand, within Ac3H11_1389at 78.227 kb on + strand, within Ac3H11_1389at 78.227 kb on + strand, within Ac3H11_1389at 78.275 kb on + strand, within Ac3H11_1389at 78.276 kb on - strand, within Ac3H11_1389at 78.276 kb on - strand, within Ac3H11_1389at 78.276 kb on - strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.365 kb on + strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.366 kb on - strand, within Ac3H11_1389at 78.389 kb on + strand, within Ac3H11_1389at 78.389 kb on + strand, within Ac3H11_1389at 78.389 kb on + strand, within Ac3H11_1389at 78.389 kb on + strand, within Ac3H11_1389at 78.389 kb on + strand, within Ac3H11_1389at 78.389 kb on + strand, within Ac3H11_1389at 78.390 kb on - strand, within Ac3H11_1389at 78.390 kb on - strand, within Ac3H11_1389at 78.390 kb on - strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.404 kb on + strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.405 kb on - strand, within Ac3H11_1389at 78.566 kb on + strandat 78.566 kb on + strandat 78.566 kb on + strandat 78.566 kb on + strandat 78.566 kb on + strandat 78.566 kb on + strandat 78.566 kb on + strandat 78.566 kb on + strandat 78.567 kb on - strandat 78.567 kb on - strandat 78.567 kb on - strandat 78.567 kb on - strandat 78.586 kb on + strandat 78.587 kb on - strandat 78.599 kb on + strandat 78.600 kb on - strandat 78.600 kb on - strandat 78.600 kb on - strandat 78.600 kb on - strandat 78.623 kb on + strandat 78.623 kb on + strandat 78.624 kb on - strandat 78.624 kb on - strandat 78.624 kb on - strandat 78.624 kb on - strandat 78.624 kb on - strandat 78.629 kb on + strandat 78.629 kb on + strandat 78.629 kb on + strandat 78.629 kb on + strandat 78.629 kb on + strandat 78.629 kb on + strandat 78.630 kb on - strandat 78.630 kb on - strandat 78.630 kb on - strandat 78.630 kb on - strandat 78.630 kb on - strandat 78.630 kb on - strandat 78.630 kb on - strandat 78.630 kb on - strandat 78.692 kb on - strandat 78.702 kb on - strandat 78.702 kb on - strandat 78.712 kb on + strandat 78.713 kb on - strandat 78.713 kb on - strandat 78.713 kb on - strandat 78.871 kb on + strandat 78.875 kb on + strandat 78.876 kb on - strandat 78.995 kb on + strandat 78.995 kb on + strandat 78.995 kb on + strandat 78.995 kb on + strandat 78.995 kb on + strandat 78.995 kb on + strandat 78.995 kb on + strandat 78.995 kb on + strandat 78.996 kb on - strandat 78.996 kb on - strandat 78.996 kb on - strandat 78.996 kb on - strandat 78.996 kb on - strandat 78.996 kb on - strandat 78.996 kb on - strandat 79.017 kb on + strandat 79.018 kb on - strandat 79.127 kb on + strand, within Ac3H11_1390at 79.127 kb on + strand, within Ac3H11_1390at 79.127 kb on + strand, within Ac3H11_1390at 79.127 kb on + strand, within Ac3H11_1390at 79.127 kb on + strand, within Ac3H11_1390at 79.127 kb on + strand, within Ac3H11_1390at 79.127 kb on + strand, within Ac3H11_1390at 79.128 kb on - strand, within Ac3H11_1390at 79.128 kb on - strand, within Ac3H11_1390at 79.128 kb on - strand, within Ac3H11_1390at 79.169 kb on + strand, within Ac3H11_1390at 79.169 kb on + strand, within Ac3H11_1390at 79.170 kb on - strand, within Ac3H11_1390at 79.170 kb on - strand, within Ac3H11_1390at 79.170 kb on - strand, within Ac3H11_1390at 79.178 kb on + strand, within Ac3H11_1390at 79.178 kb on + strand, within Ac3H11_1390at 79.178 kb on + strand, within Ac3H11_1390at 79.178 kb on + strand, within Ac3H11_1390at 79.179 kb on - strand, within Ac3H11_1390at 79.179 kb on - strand, within Ac3H11_1390at 79.179 kb on - strand, within Ac3H11_1390at 79.179 kb on - strand, within Ac3H11_1390at 79.179 kb on - strand, within Ac3H11_1390at 79.193 kb on + strand, within Ac3H11_1390at 79.193 kb on + strand, within Ac3H11_1390at 79.193 kb on + strand, within Ac3H11_1390at 79.193 kb on + strand, within Ac3H11_1390at 79.194 kb on - strand, within Ac3H11_1390at 79.194 kb on - strand, within Ac3H11_1390at 79.194 kb on - strand, within Ac3H11_1390at 79.205 kb on + strand, within Ac3H11_1390at 79.205 kb on + strand, within Ac3H11_1390at 79.205 kb on + strand, within Ac3H11_1390at 79.205 kb on + strand, within Ac3H11_1390at 79.206 kb on - strand, within Ac3H11_1390at 79.206 kb on - strand, within Ac3H11_1390at 79.206 kb on - strand, within Ac3H11_1390at 79.206 kb on - strand, within Ac3H11_1390at 79.206 kb on - strand, within Ac3H11_1390at 79.206 kb on - strand, within Ac3H11_1390at 79.206 kb on - strand, within Ac3H11_1390at 79.352 kb on + strand, within Ac3H11_1390at 79.353 kb on - strand, within Ac3H11_1390at 79.353 kb on - strand, within Ac3H11_1390at 79.353 kb on - strand, within Ac3H11_1390at 79.353 kb on - strand, within Ac3H11_1390at 79.381 kb on + strand, within Ac3H11_1390at 79.381 kb on + strand, within Ac3H11_1390at 79.381 kb on + strand, within Ac3H11_1390at 79.381 kb on + strand, within Ac3H11_1390at 79.381 kb on + strand, within Ac3H11_1390at 79.381 kb on + strand, within Ac3H11_1390at 79.381 kb on + strand, within Ac3H11_1390at 79.382 kb on - strand, within Ac3H11_1390at 79.382 kb on - strand, within Ac3H11_1390at 79.382 kb on - strand, within Ac3H11_1390at 79.382 kb on - strand, within Ac3H11_1390at 79.382 kb on - strand, within Ac3H11_1390at 79.385 kb on + strand, within Ac3H11_1390at 79.386 kb on - strand, within Ac3H11_1390at 79.488 kb on - strand, within Ac3H11_1390at 79.775 kb on + strandat 79.775 kb on + strandat 79.775 kb on + strandat 79.776 kb on - strandat 80.100 kb on + strand, within Ac3H11_1391at 80.221 kb on + strand, within Ac3H11_1391at 80.263 kb on + strand, within Ac3H11_1391at 80.264 kb on - strand, within Ac3H11_1391at 80.264 kb on - strand, within Ac3H11_1391at 80.264 kb on - strand, within Ac3H11_1391at 80.264 kb on - strand, within Ac3H11_1391at 80.264 kb on - strand, within Ac3H11_1391at 80.305 kb on + strand, within Ac3H11_1391at 80.306 kb on - strand, within Ac3H11_1391at 80.503 kb on + strand, within Ac3H11_1391at 80.503 kb on + strand, within Ac3H11_1391at 80.554 kb on + strand, within Ac3H11_1391at 80.554 kb on + strand, within Ac3H11_1391at 80.555 kb on - strand, within Ac3H11_1391

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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78,227 + Ac3H11_1389 0.60 +1.8
78,227 + Ac3H11_1389 0.60 -1.9
78,227 + Ac3H11_1389 0.60 +0.5
78,227 + Ac3H11_1389 0.60 +4.9
78,275 + Ac3H11_1389 0.66 +0.6
78,276 - Ac3H11_1389 0.66 +1.8
78,276 - Ac3H11_1389 0.66 +1.2
78,276 - Ac3H11_1389 0.66 +1.3
78,365 + Ac3H11_1389 0.78 +0.8
78,365 + Ac3H11_1389 0.78 -1.2
78,365 + Ac3H11_1389 0.78 +0.0
78,365 + Ac3H11_1389 0.78 +0.6
78,365 + Ac3H11_1389 0.78 +1.2
78,365 + Ac3H11_1389 0.78 +1.2
78,365 + Ac3H11_1389 0.78 +0.7
78,365 + Ac3H11_1389 0.78 +0.5
78,365 + Ac3H11_1389 0.78 -1.3
78,365 + Ac3H11_1389 0.78 +0.6
78,365 + Ac3H11_1389 0.78 +0.9
78,366 - Ac3H11_1389 0.78 -0.4
78,366 - Ac3H11_1389 0.78 +1.2
78,366 - Ac3H11_1389 0.78 +0.5
78,366 - Ac3H11_1389 0.78 +0.6
78,366 - Ac3H11_1389 0.78 +1.0
78,366 - Ac3H11_1389 0.78 -0.0
78,366 - Ac3H11_1389 0.78 +2.6
78,366 - Ac3H11_1389 0.78 +0.9
78,366 - Ac3H11_1389 0.78 +1.1
78,366 - Ac3H11_1389 0.78 -1.1
78,366 - Ac3H11_1389 0.78 +0.2
78,366 - Ac3H11_1389 0.78 +0.6
78,389 + Ac3H11_1389 0.81 -1.7
78,389 + Ac3H11_1389 0.81 +0.2
78,389 + Ac3H11_1389 0.81 +0.4
78,389 + Ac3H11_1389 0.81 +0.6
78,389 + Ac3H11_1389 0.81 -0.1
78,389 + Ac3H11_1389 0.81 -1.7
78,390 - Ac3H11_1389 0.81 +0.3
78,390 - Ac3H11_1389 0.81 -0.8
78,390 - Ac3H11_1389 0.81 -1.0
78,404 + Ac3H11_1389 0.83 +0.8
78,404 + Ac3H11_1389 0.83 +0.1
78,404 + Ac3H11_1389 0.83 -1.1
78,404 + Ac3H11_1389 0.83 +0.1
78,404 + Ac3H11_1389 0.83 -0.2
78,404 + Ac3H11_1389 0.83 +0.3
78,404 + Ac3H11_1389 0.83 +0.3
78,404 + Ac3H11_1389 0.83 +0.6
78,404 + Ac3H11_1389 0.83 +1.7
78,405 - Ac3H11_1389 0.83 +1.5
78,405 - Ac3H11_1389 0.83 -1.1
78,405 - Ac3H11_1389 0.83 +0.9
78,405 - Ac3H11_1389 0.83 +0.3
78,405 - Ac3H11_1389 0.83 +1.7
78,405 - Ac3H11_1389 0.83 +0.8
78,405 - Ac3H11_1389 0.83 +0.7
78,405 - Ac3H11_1389 0.83 -0.7
78,405 - Ac3H11_1389 0.83 +0.8
78,566 + -0.3
78,566 + +0.7
78,566 + -0.1
78,566 + +0.4
78,566 + +0.5
78,566 + +0.8
78,566 + +0.3
78,566 + -0.2
78,567 - +0.4
78,567 - +0.6
78,567 - -0.2
78,567 - -0.2
78,586 + +1.0
78,587 - +0.1
78,599 + +0.7
78,600 - +0.6
78,600 - +0.8
78,600 - +0.5
78,600 - +0.9
78,623 + +0.3
78,623 + +0.8
78,624 - +0.5
78,624 - -0.8
78,624 - +0.6
78,624 - -0.2
78,624 - +0.0
78,629 + +1.0
78,629 + +0.9
78,629 + -0.5
78,629 + +1.5
78,629 + +0.4
78,629 + -0.7
78,630 - +0.0
78,630 - +0.3
78,630 - +0.5
78,630 - -1.0
78,630 - -0.7
78,630 - -0.9
78,630 - -0.2
78,630 - -0.2
78,692 - +0.6
78,702 - -0.4
78,702 - -0.1
78,712 + +1.5
78,713 - -0.1
78,713 - -0.9
78,713 - -0.4
78,871 + +0.0
78,875 + -0.2
78,876 - -2.8
78,995 + -1.1
78,995 + -0.4
78,995 + -1.1
78,995 + -0.1
78,995 + -0.7
78,995 + -0.5
78,995 + -0.3
78,995 + -0.7
78,996 - -0.4
78,996 - +0.2
78,996 - -0.5
78,996 - -0.1
78,996 - +0.4
78,996 - -0.3
78,996 - -1.9
79,017 + +0.1
79,018 - +4.1
79,127 + Ac3H11_1390 0.16 -0.7
79,127 + Ac3H11_1390 0.16 -0.2
79,127 + Ac3H11_1390 0.16 +1.0
79,127 + Ac3H11_1390 0.16 +2.8
79,127 + Ac3H11_1390 0.16 +0.2
79,127 + Ac3H11_1390 0.16 +0.3
79,127 + Ac3H11_1390 0.16 +0.8
79,128 - Ac3H11_1390 0.16 -1.7
79,128 - Ac3H11_1390 0.16 -0.7
79,128 - Ac3H11_1390 0.16 +0.2
79,169 + Ac3H11_1390 0.21 +0.3
79,169 + Ac3H11_1390 0.21 -0.5
79,170 - Ac3H11_1390 0.21 -0.9
79,170 - Ac3H11_1390 0.21 -2.6
79,170 - Ac3H11_1390 0.21 -2.2
79,178 + Ac3H11_1390 0.22 +0.8
79,178 + Ac3H11_1390 0.22 -0.8
79,178 + Ac3H11_1390 0.22 -0.9
79,178 + Ac3H11_1390 0.22 -0.8
79,179 - Ac3H11_1390 0.22 -0.3
79,179 - Ac3H11_1390 0.22 -0.0
79,179 - Ac3H11_1390 0.22 -0.4
79,179 - Ac3H11_1390 0.22 -0.9
79,179 - Ac3H11_1390 0.22 -0.7
79,193 + Ac3H11_1390 0.24 +1.0
79,193 + Ac3H11_1390 0.24 -1.7
79,193 + Ac3H11_1390 0.24 +0.2
79,193 + Ac3H11_1390 0.24 -2.1
79,194 - Ac3H11_1390 0.24 -0.4
79,194 - Ac3H11_1390 0.24 -0.3
79,194 - Ac3H11_1390 0.24 -1.0
79,205 + Ac3H11_1390 0.26 +0.2
79,205 + Ac3H11_1390 0.26 -0.1
79,205 + Ac3H11_1390 0.26 -0.4
79,205 + Ac3H11_1390 0.26 +1.4
79,206 - Ac3H11_1390 0.26 -2.0
79,206 - Ac3H11_1390 0.26 -0.3
79,206 - Ac3H11_1390 0.26 +0.8
79,206 - Ac3H11_1390 0.26 -0.6
79,206 - Ac3H11_1390 0.26 -0.5
79,206 - Ac3H11_1390 0.26 -0.3
79,206 - Ac3H11_1390 0.26 +0.6
79,352 + Ac3H11_1390 0.45 -1.6
79,353 - Ac3H11_1390 0.45 -0.7
79,353 - Ac3H11_1390 0.45 -1.1
79,353 - Ac3H11_1390 0.45 -1.1
79,353 - Ac3H11_1390 0.45 +0.0
79,381 + Ac3H11_1390 0.49 +1.3
79,381 + Ac3H11_1390 0.49 -0.6
79,381 + Ac3H11_1390 0.49 -0.8
79,381 + Ac3H11_1390 0.49 +0.3
79,381 + Ac3H11_1390 0.49 -1.5
79,381 + Ac3H11_1390 0.49 -0.1
79,381 + Ac3H11_1390 0.49 -1.2
79,382 - Ac3H11_1390 0.49 -1.2
79,382 - Ac3H11_1390 0.49 -1.6
79,382 - Ac3H11_1390 0.49 +0.0
79,382 - Ac3H11_1390 0.49 -0.4
79,382 - Ac3H11_1390 0.49 -0.9
79,385 + Ac3H11_1390 0.49 +0.9
79,386 - Ac3H11_1390 0.49 -0.5
79,488 - Ac3H11_1390 0.62 -0.7
79,775 + +0.4
79,775 + -0.4
79,775 + -0.7
79,776 - -0.5
80,100 + Ac3H11_1391 0.30 +1.5
80,221 + Ac3H11_1391 0.41 -1.4
80,263 + Ac3H11_1391 0.45 -0.3
80,264 - Ac3H11_1391 0.45 -2.6
80,264 - Ac3H11_1391 0.45 -1.7
80,264 - Ac3H11_1391 0.45 -1.6
80,264 - Ac3H11_1391 0.45 -0.8
80,264 - Ac3H11_1391 0.45 -0.8
80,305 + Ac3H11_1391 0.49 -0.7
80,306 - Ac3H11_1391 0.49 +0.5
80,503 + Ac3H11_1391 0.67 +1.1
80,503 + Ac3H11_1391 0.67 -1.4
80,554 + Ac3H11_1391 0.72 -0.4
80,554 + Ac3H11_1391 0.72 +0.1
80,555 - Ac3H11_1391 0.72 +0.3

Or see this region's nucleotide sequence