Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1163

Experiment: phage 93.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1163 and Ac3H11_1164 are separated by 213 nucleotidesAc3H11_1164 and Ac3H11_1165 are separated by 42 nucleotides Ac3H11_1163 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 280 to 1,125 _1163 Ac3H11_1164 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 1,339 to 1,689 _1164 Ac3H11_1165 - Transcriptional regulator, LysR family, at 1,732 to 2,685 _1165 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.105 kb on + strandat 0.160 kb on - strandat 0.222 kb on - strandat 0.335 kb on + strandat 0.335 kb on + strandat 0.335 kb on + strandat 0.335 kb on + strandat 0.335 kb on + strandat 0.336 kb on - strandat 0.336 kb on - strandat 0.336 kb on - strandat 0.336 kb on - strandat 0.638 kb on + strand, within Ac3H11_1163at 0.859 kb on - strand, within Ac3H11_1163at 0.859 kb on - strand, within Ac3H11_1163at 0.891 kb on - strand, within Ac3H11_1163at 0.891 kb on - strand, within Ac3H11_1163at 0.891 kb on - strand, within Ac3H11_1163at 0.918 kb on + strand, within Ac3H11_1163at 0.918 kb on + strand, within Ac3H11_1163at 0.918 kb on + strand, within Ac3H11_1163at 0.919 kb on - strand, within Ac3H11_1163at 0.959 kb on + strand, within Ac3H11_1163at 0.959 kb on + strand, within Ac3H11_1163at 0.959 kb on + strand, within Ac3H11_1163at 0.960 kb on - strand, within Ac3H11_1163at 0.960 kb on - strand, within Ac3H11_1163at 0.960 kb on - strand, within Ac3H11_1163at 0.960 kb on - strand, within Ac3H11_1163at 1.454 kb on + strand, within Ac3H11_1164at 1.454 kb on + strand, within Ac3H11_1164at 1.454 kb on + strand, within Ac3H11_1164at 1.454 kb on + strand, within Ac3H11_1164at 1.454 kb on + strand, within Ac3H11_1164at 1.454 kb on + strand, within Ac3H11_1164at 1.455 kb on - strand, within Ac3H11_1164at 1.457 kb on + strand, within Ac3H11_1164at 1.535 kb on + strand, within Ac3H11_1164at 1.535 kb on + strand, within Ac3H11_1164at 1.536 kb on - strand, within Ac3H11_1164at 1.536 kb on - strand, within Ac3H11_1164at 1.536 kb on - strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.547 kb on + strand, within Ac3H11_1164at 1.548 kb on - strand, within Ac3H11_1164at 1.548 kb on - strand, within Ac3H11_1164at 1.548 kb on - strand, within Ac3H11_1164at 1.548 kb on - strand, within Ac3H11_1164at 1.548 kb on - strand, within Ac3H11_1164at 1.548 kb on - strand, within Ac3H11_1164at 1.548 kb on - strand, within Ac3H11_1164at 1.622 kb on + strand, within Ac3H11_1164at 1.622 kb on + strand, within Ac3H11_1164at 1.622 kb on + strand, within Ac3H11_1164at 1.622 kb on + strand, within Ac3H11_1164at 1.622 kb on + strand, within Ac3H11_1164at 1.623 kb on - strand, within Ac3H11_1164at 1.710 kb on + strandat 1.710 kb on + strandat 1.710 kb on + strandat 1.711 kb on - strandat 1.711 kb on - strandat 1.711 kb on - strandat 1.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 93.1
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105 + -2.1
160 - +0.2
222 - +0.1
335 + -0.8
335 + -0.2
335 + +1.7
335 + +1.2
335 + -0.1
336 - +0.7
336 - -1.5
336 - -0.0
336 - +0.1
638 + Ac3H11_1163 0.42 +0.4
859 - Ac3H11_1163 0.68 +0.8
859 - Ac3H11_1163 0.68 +0.2
891 - Ac3H11_1163 0.72 -0.2
891 - Ac3H11_1163 0.72 +1.5
891 - Ac3H11_1163 0.72 +1.3
918 + Ac3H11_1163 0.75 +0.9
918 + Ac3H11_1163 0.75 +0.5
918 + Ac3H11_1163 0.75 -0.9
919 - Ac3H11_1163 0.76 -0.9
959 + Ac3H11_1163 0.80 -0.1
959 + Ac3H11_1163 0.80 +0.5
959 + Ac3H11_1163 0.80 +0.4
960 - Ac3H11_1163 0.80 +0.3
960 - Ac3H11_1163 0.80 +1.0
960 - Ac3H11_1163 0.80 -1.3
960 - Ac3H11_1163 0.80 +0.7
1,454 + Ac3H11_1164 0.33 -1.1
1,454 + Ac3H11_1164 0.33 -0.2
1,454 + Ac3H11_1164 0.33 +1.2
1,454 + Ac3H11_1164 0.33 +0.3
1,454 + Ac3H11_1164 0.33 +0.2
1,454 + Ac3H11_1164 0.33 +0.8
1,455 - Ac3H11_1164 0.33 +0.5
1,457 + Ac3H11_1164 0.34 -0.3
1,535 + Ac3H11_1164 0.56 +0.9
1,535 + Ac3H11_1164 0.56 +1.4
1,536 - Ac3H11_1164 0.56 +2.2
1,536 - Ac3H11_1164 0.56 +0.4
1,536 - Ac3H11_1164 0.56 -0.1
1,547 + Ac3H11_1164 0.59 +1.1
1,547 + Ac3H11_1164 0.59 -1.0
1,547 + Ac3H11_1164 0.59 -0.2
1,547 + Ac3H11_1164 0.59 +0.3
1,547 + Ac3H11_1164 0.59 -0.2
1,547 + Ac3H11_1164 0.59 +0.1
1,547 + Ac3H11_1164 0.59 +0.1
1,547 + Ac3H11_1164 0.59 -0.9
1,547 + Ac3H11_1164 0.59 +0.6
1,547 + Ac3H11_1164 0.59 -0.1
1,547 + Ac3H11_1164 0.59 -0.3
1,547 + Ac3H11_1164 0.59 -0.1
1,547 + Ac3H11_1164 0.59 +0.2
1,547 + Ac3H11_1164 0.59 -1.2
1,548 - Ac3H11_1164 0.60 +0.5
1,548 - Ac3H11_1164 0.60 -0.9
1,548 - Ac3H11_1164 0.60 -1.3
1,548 - Ac3H11_1164 0.60 +1.1
1,548 - Ac3H11_1164 0.60 -0.9
1,548 - Ac3H11_1164 0.60 -0.2
1,548 - Ac3H11_1164 0.60 +0.2
1,622 + Ac3H11_1164 0.81 +0.7
1,622 + Ac3H11_1164 0.81 +3.2
1,622 + Ac3H11_1164 0.81 +1.1
1,622 + Ac3H11_1164 0.81 +1.4
1,622 + Ac3H11_1164 0.81 -0.3
1,623 - Ac3H11_1164 0.81 +1.3
1,710 + -1.1
1,710 + -0.4
1,710 + -0.6
1,711 - -1.3
1,711 - +0.2
1,711 - -0.6
1,711 - -0.9

Or see this region's nucleotide sequence