Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17930 and HMPREF1058_RS17925 are separated by 180 nucleotides HMPREF1058_RS17925 and HMPREF1058_RS17920 are separated by 482 nucleotides
HMPREF1058_RS17930: HMPREF1058_RS17930 - glycogen debranching enzyme N-terminal domain-containing protein, at 297,590 to 299,530
_RS17930
HMPREF1058_RS17925: HMPREF1058_RS17925 - rhomboid family intramembrane serine protease, at 299,711 to 300,376
_RS17925
HMPREF1058_RS17920: HMPREF1058_RS17920 - formate-dependent phosphoribosylglycinamide formyltransferase, at 300,859 to 302,028
_RS17920
Position (kb) 299
300
301 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 298.723 kb on + strand, within HMPREF1058_RS17930 at 298.774 kb on + strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.964 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.968 kb on - strand, within HMPREF1058_RS17930 at 299.053 kb on + strand, within HMPREF1058_RS17930 at 299.056 kb on - strand, within HMPREF1058_RS17930 at 299.101 kb on + strand, within HMPREF1058_RS17930 at 299.129 kb on - strand, within HMPREF1058_RS17930 at 299.130 kb on + strand, within HMPREF1058_RS17930 at 299.204 kb on + strand, within HMPREF1058_RS17930 at 299.205 kb on - strand at 299.205 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.212 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.265 kb on + strand, within HMPREF1058_RS17930 at 299.281 kb on - strand, within HMPREF1058_RS17930 at 299.318 kb on + strand, within HMPREF1058_RS17930 at 299.348 kb on + strand at 299.348 kb on + strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.431 kb on + strand at 299.520 kb on - strand at 299.520 kb on - strand at 299.530 kb on + strand at 299.531 kb on - strand at 299.531 kb on - strand at 299.542 kb on + strand at 299.677 kb on - strand at 299.679 kb on + strand at 299.699 kb on - strand at 299.834 kb on + strand, within HMPREF1058_RS17925 at 299.856 kb on + strand, within HMPREF1058_RS17925 at 299.905 kb on - strand, within HMPREF1058_RS17925 at 299.938 kb on - strand, within HMPREF1058_RS17925 at 299.978 kb on - strand, within HMPREF1058_RS17925 at 299.979 kb on + strand, within HMPREF1058_RS17925 at 300.021 kb on + strand, within HMPREF1058_RS17925 at 300.043 kb on + strand, within HMPREF1058_RS17925 at 300.058 kb on + strand, within HMPREF1058_RS17925 at 300.060 kb on + strand, within HMPREF1058_RS17925 at 300.123 kb on + strand, within HMPREF1058_RS17925 at 300.151 kb on - strand, within HMPREF1058_RS17925 at 300.152 kb on + strand, within HMPREF1058_RS17925 at 300.452 kb on + strand at 300.481 kb on - strand at 300.481 kb on - strand at 300.524 kb on + strand at 300.525 kb on - strand at 300.529 kb on + strand at 300.644 kb on + strand at 300.644 kb on + strand at 300.677 kb on + strand at 300.682 kb on + strand at 300.748 kb on + strand at 300.838 kb on + strand at 300.839 kb on - strand at 300.850 kb on + strand at 300.851 kb on - strand at 300.851 kb on - strand at 300.857 kb on + strand at 300.857 kb on + strand at 300.936 kb on - strand at 300.972 kb on + strand at 300.973 kb on - strand at 300.991 kb on - strand, within HMPREF1058_RS17920 at 300.999 kb on - strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 remove 298,723 + HMPREF1058_RS17930 0.58 -2.7 298,774 + HMPREF1058_RS17930 0.61 -2.5 298,830 - HMPREF1058_RS17930 0.64 -2.4 298,830 - HMPREF1058_RS17930 0.64 -3.8 298,964 - HMPREF1058_RS17930 0.71 -3.0 298,966 - HMPREF1058_RS17930 0.71 -3.0 298,966 - HMPREF1058_RS17930 0.71 -1.0 298,966 - HMPREF1058_RS17930 0.71 -2.4 298,968 - HMPREF1058_RS17930 0.71 -6.2 299,053 + HMPREF1058_RS17930 0.75 -2.2 299,056 - HMPREF1058_RS17930 0.76 -4.1 299,101 + HMPREF1058_RS17930 0.78 -1.7 299,129 - HMPREF1058_RS17930 0.79 -3.5 299,130 + HMPREF1058_RS17930 0.79 -2.0 299,204 + HMPREF1058_RS17930 0.83 -1.0 299,205 - +0.6 299,205 - HMPREF1058_RS17930 0.83 +0.6 299,207 - HMPREF1058_RS17930 0.83 -3.8 299,207 - HMPREF1058_RS17930 0.83 -1.0 299,212 + HMPREF1058_RS17930 0.84 +0.6 299,244 + HMPREF1058_RS17930 0.85 -1.0 299,244 + HMPREF1058_RS17930 0.85 -2.8 299,245 - HMPREF1058_RS17930 0.85 -4.3 299,245 - HMPREF1058_RS17930 0.85 -3.2 299,245 - HMPREF1058_RS17930 0.85 +0.6 299,245 - HMPREF1058_RS17930 0.85 -3.7 299,265 + HMPREF1058_RS17930 0.86 -1.0 299,281 - HMPREF1058_RS17930 0.87 +0.6 299,318 + HMPREF1058_RS17930 0.89 -1.0 299,348 + -2.7 299,348 + -0.4 299,349 - -4.7 299,349 - -2.8 299,349 - -3.2 299,431 + -2.2 299,520 - -4.2 299,520 - -2.5 299,530 + -1.7 299,531 - -6.0 299,531 - -1.0 299,542 + +0.6 299,677 - -0.4 299,679 + -1.4 299,699 - -0.6 299,834 + HMPREF1058_RS17925 0.18 -0.3 299,856 + HMPREF1058_RS17925 0.22 -2.3 299,905 - HMPREF1058_RS17925 0.29 +0.4 299,938 - HMPREF1058_RS17925 0.34 -1.0 299,978 - HMPREF1058_RS17925 0.40 +1.9 299,979 + HMPREF1058_RS17925 0.40 -1.3 300,021 + HMPREF1058_RS17925 0.47 -1.5 300,043 + HMPREF1058_RS17925 0.50 -2.0 300,058 + HMPREF1058_RS17925 0.52 +1.1 300,060 + HMPREF1058_RS17925 0.52 +0.0 300,123 + HMPREF1058_RS17925 0.62 -1.0 300,151 - HMPREF1058_RS17925 0.66 -0.3 300,152 + HMPREF1058_RS17925 0.66 -0.4 300,452 + -3.4 300,481 - -1.1 300,481 - -1.0 300,524 + -0.3 300,525 - +0.7 300,529 + +0.8 300,644 + -0.2 300,644 + -0.4 300,677 + -0.4 300,682 + -1.3 300,748 + -0.4 300,838 + -0.7 300,839 - -1.8 300,850 + -1.8 300,851 - +0.2 300,851 - +1.6 300,857 + -0.4 300,857 + +0.8 300,936 - -0.4 300,972 + -1.2 300,973 - +0.6 300,991 - HMPREF1058_RS17920 0.11 -3.6 300,999 - HMPREF1058_RS17920 0.12 -0.7 301,002 + HMPREF1058_RS17920 0.12 -0.2 301,002 + HMPREF1058_RS17920 0.12 -1.7
Or see this region's nucleotide sequence