Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17015 and HMPREF1058_RS17010 are separated by 57 nucleotides HMPREF1058_RS17010 and HMPREF1058_RS17005 are separated by 837 nucleotides
HMPREF1058_RS17015: HMPREF1058_RS17015 - SpoIID/LytB domain-containing protein, at 538,435 to 539,751
_RS17015
HMPREF1058_RS17010: HMPREF1058_RS17010 - MFS transporter, at 539,809 to 541,083
_RS17010
HMPREF1058_RS17005: HMPREF1058_RS17005 - DUF4251 domain-containing protein, at 541,921 to 542,475
_RS17005
Position (kb) 539
540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 538.931 kb on - strand, within HMPREF1058_RS17015 at 538.959 kb on + strand, within HMPREF1058_RS17015 at 538.965 kb on - strand, within HMPREF1058_RS17015 at 538.965 kb on - strand, within HMPREF1058_RS17015 at 539.045 kb on + strand, within HMPREF1058_RS17015 at 539.046 kb on - strand, within HMPREF1058_RS17015 at 539.074 kb on + strand, within HMPREF1058_RS17015 at 539.162 kb on - strand, within HMPREF1058_RS17015 at 539.167 kb on + strand, within HMPREF1058_RS17015 at 539.167 kb on + strand, within HMPREF1058_RS17015 at 539.691 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.749 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.852 kb on + strand at 539.853 kb on - strand at 539.853 kb on - strand at 539.875 kb on + strand at 539.876 kb on - strand at 539.911 kb on - strand at 540.075 kb on - strand, within HMPREF1058_RS17010 at 540.135 kb on - strand, within HMPREF1058_RS17010 at 540.135 kb on - strand, within HMPREF1058_RS17010 at 540.178 kb on + strand, within HMPREF1058_RS17010 at 540.219 kb on - strand, within HMPREF1058_RS17010 at 540.269 kb on + strand, within HMPREF1058_RS17010 at 540.270 kb on - strand, within HMPREF1058_RS17010 at 540.270 kb on - strand, within HMPREF1058_RS17010 at 540.273 kb on + strand, within HMPREF1058_RS17010 at 540.274 kb on - strand, within HMPREF1058_RS17010 at 540.309 kb on + strand, within HMPREF1058_RS17010 at 540.310 kb on - strand, within HMPREF1058_RS17010 at 540.314 kb on + strand, within HMPREF1058_RS17010 at 540.314 kb on + strand, within HMPREF1058_RS17010 at 540.314 kb on + strand, within HMPREF1058_RS17010 at 540.315 kb on - strand, within HMPREF1058_RS17010 at 540.345 kb on - strand, within HMPREF1058_RS17010 at 540.381 kb on + strand, within HMPREF1058_RS17010 at 540.519 kb on - strand, within HMPREF1058_RS17010 at 540.573 kb on - strand, within HMPREF1058_RS17010 at 540.681 kb on - strand, within HMPREF1058_RS17010 at 540.749 kb on + strand, within HMPREF1058_RS17010 at 540.755 kb on - strand, within HMPREF1058_RS17010 at 540.770 kb on - strand, within HMPREF1058_RS17010 at 540.770 kb on - strand, within HMPREF1058_RS17010 at 540.790 kb on + strand, within HMPREF1058_RS17010 at 540.801 kb on + strand, within HMPREF1058_RS17010 at 540.851 kb on + strand, within HMPREF1058_RS17010 at 540.851 kb on - strand, within HMPREF1058_RS17010 at 540.852 kb on + strand, within HMPREF1058_RS17010 at 540.930 kb on - strand, within HMPREF1058_RS17010 at 541.006 kb on - strand at 541.011 kb on - strand at 541.164 kb on + strand at 541.168 kb on + strand at 541.168 kb on + strand at 541.196 kb on - strand at 541.267 kb on + strand at 541.609 kb on - strand at 541.630 kb on - strand at 541.642 kb on + strand at 541.642 kb on + strand at 541.675 kb on - strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.690 kb on + strand at 541.690 kb on + strand at 541.690 kb on + strand at 541.690 kb on + strand at 541.691 kb on - strand at 541.691 kb on - strand at 541.694 kb on + strand at 541.694 kb on + strand at 541.715 kb on + strand at 541.715 kb on + strand at 541.810 kb on - strand at 541.810 kb on - strand at 541.816 kb on + strand at 541.817 kb on - strand at 541.827 kb on - strand at 541.892 kb on - strand at 541.914 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.920 kb on + strand at 541.933 kb on - strand at 541.937 kb on + strand at 541.938 kb on - strand at 542.034 kb on + strand, within HMPREF1058_RS17005
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 remove 538,931 - HMPREF1058_RS17015 0.38 -1.3 538,959 + HMPREF1058_RS17015 0.40 +2.7 538,965 - HMPREF1058_RS17015 0.40 -1.3 538,965 - HMPREF1058_RS17015 0.40 +0.0 539,045 + HMPREF1058_RS17015 0.46 -2.1 539,046 - HMPREF1058_RS17015 0.46 +0.4 539,074 + HMPREF1058_RS17015 0.49 -0.3 539,162 - HMPREF1058_RS17015 0.55 -0.9 539,167 + HMPREF1058_RS17015 0.56 -1.5 539,167 + HMPREF1058_RS17015 0.56 +0.7 539,691 + -0.8 539,691 + -1.1 539,691 + +1.2 539,692 - -2.3 539,692 - -0.6 539,692 - -2.2 539,692 - -1.3 539,692 - -0.1 539,692 - -0.3 539,749 + +0.9 539,823 + -0.3 539,823 + -0.1 539,823 + -0.3 539,852 + +0.5 539,853 - -0.7 539,853 - -1.2 539,875 + +0.7 539,876 - -1.3 539,911 - +1.6 540,075 - HMPREF1058_RS17010 0.21 -1.0 540,135 - HMPREF1058_RS17010 0.26 +1.4 540,135 - HMPREF1058_RS17010 0.26 -3.2 540,178 + HMPREF1058_RS17010 0.29 +1.1 540,219 - HMPREF1058_RS17010 0.32 -1.2 540,269 + HMPREF1058_RS17010 0.36 -3.3 540,270 - HMPREF1058_RS17010 0.36 -0.9 540,270 - HMPREF1058_RS17010 0.36 -1.6 540,273 + HMPREF1058_RS17010 0.36 -0.3 540,274 - HMPREF1058_RS17010 0.36 +1.3 540,309 + HMPREF1058_RS17010 0.39 +0.1 540,310 - HMPREF1058_RS17010 0.39 -0.9 540,314 + HMPREF1058_RS17010 0.40 +1.9 540,314 + HMPREF1058_RS17010 0.40 +1.8 540,314 + HMPREF1058_RS17010 0.40 -0.3 540,315 - HMPREF1058_RS17010 0.40 -1.9 540,345 - HMPREF1058_RS17010 0.42 -0.3 540,381 + HMPREF1058_RS17010 0.45 +0.3 540,519 - HMPREF1058_RS17010 0.56 +1.0 540,573 - HMPREF1058_RS17010 0.60 -0.1 540,681 - HMPREF1058_RS17010 0.68 -1.9 540,749 + HMPREF1058_RS17010 0.74 +0.7 540,755 - HMPREF1058_RS17010 0.74 -0.6 540,770 - HMPREF1058_RS17010 0.75 +1.1 540,770 - HMPREF1058_RS17010 0.75 -1.9 540,790 + HMPREF1058_RS17010 0.77 -0.3 540,801 + HMPREF1058_RS17010 0.78 +0.5 540,851 + HMPREF1058_RS17010 0.82 -1.9 540,851 - HMPREF1058_RS17010 0.82 +0.7 540,852 + HMPREF1058_RS17010 0.82 +1.0 540,930 - HMPREF1058_RS17010 0.88 +2.0 541,006 - -1.7 541,011 - +2.6 541,164 + +0.8 541,168 + -2.2 541,168 + +1.2 541,196 - -1.9 541,267 + -0.5 541,609 - +1.3 541,630 - +1.7 541,642 + -1.9 541,642 + -0.0 541,675 - -0.9 541,686 + +0.6 541,686 + -2.5 541,690 + -2.3 541,690 + -0.5 541,690 + +0.4 541,690 + +0.7 541,691 - +0.7 541,691 - -2.3 541,694 + -1.7 541,694 + -0.3 541,715 + -2.1 541,715 + -0.3 541,810 - +0.5 541,810 - +1.5 541,816 + +0.9 541,817 - +2.9 541,827 - -2.1 541,892 - +2.5 541,914 + +1.7 541,918 + +2.8 541,918 + -1.3 541,918 + +0.9 541,918 + +2.0 541,918 + -0.4 541,919 - +0.5 541,919 - -0.0 541,919 - -1.9 541,919 - +1.7 541,919 - -2.3 541,920 + -0.8 541,933 - +0.7 541,937 + +1.3 541,938 - -2.3 542,034 + HMPREF1058_RS17005 0.20 -0.9
Or see this region's nucleotide sequence