Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16555

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16560 and HMPREF1058_RS16555 are separated by 1 nucleotidesHMPREF1058_RS16555 and HMPREF1058_RS16550 are separated by 118 nucleotides HMPREF1058_RS16560: HMPREF1058_RS16560 - MFS transporter, at 646,084 to 647,259 _RS16560 HMPREF1058_RS16555: HMPREF1058_RS16555 - DUF2721 domain-containing protein, at 647,261 to 647,650 _RS16555 HMPREF1058_RS16550: HMPREF1058_RS16550 - DUF3843 family protein, at 647,769 to 648,938 _RS16550 Position (kb) 647 648Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 646.263 kb on - strand, within HMPREF1058_RS16560at 646.263 kb on - strand, within HMPREF1058_RS16560at 646.267 kb on + strand, within HMPREF1058_RS16560at 646.385 kb on - strand, within HMPREF1058_RS16560at 646.385 kb on - strand, within HMPREF1058_RS16560at 646.500 kb on - strand, within HMPREF1058_RS16560at 646.503 kb on + strand, within HMPREF1058_RS16560at 646.504 kb on - strand, within HMPREF1058_RS16560at 646.504 kb on - strand, within HMPREF1058_RS16560at 646.548 kb on - strand, within HMPREF1058_RS16560at 646.619 kb on + strand, within HMPREF1058_RS16560at 646.619 kb on + strand, within HMPREF1058_RS16560at 646.643 kb on + strand, within HMPREF1058_RS16560at 646.643 kb on + strand, within HMPREF1058_RS16560at 646.644 kb on - strand, within HMPREF1058_RS16560at 646.800 kb on + strand, within HMPREF1058_RS16560at 646.842 kb on - strand, within HMPREF1058_RS16560at 646.889 kb on - strand, within HMPREF1058_RS16560at 646.889 kb on - strand, within HMPREF1058_RS16560at 646.889 kb on - strand, within HMPREF1058_RS16560at 646.900 kb on + strand, within HMPREF1058_RS16560at 646.953 kb on - strand, within HMPREF1058_RS16560at 646.976 kb on - strand, within HMPREF1058_RS16560at 646.993 kb on + strand, within HMPREF1058_RS16560at 647.024 kb on + strand, within HMPREF1058_RS16560at 647.029 kb on - strand, within HMPREF1058_RS16560at 647.031 kb on - strand, within HMPREF1058_RS16560at 647.126 kb on - strand, within HMPREF1058_RS16560at 647.148 kb on + strandat 647.311 kb on - strand, within HMPREF1058_RS16555at 647.372 kb on - strand, within HMPREF1058_RS16555at 647.381 kb on + strand, within HMPREF1058_RS16555at 647.388 kb on + strand, within HMPREF1058_RS16555at 647.389 kb on - strand, within HMPREF1058_RS16555at 647.396 kb on + strand, within HMPREF1058_RS16555at 647.397 kb on - strand, within HMPREF1058_RS16555at 647.397 kb on - strand, within HMPREF1058_RS16555at 647.397 kb on - strand, within HMPREF1058_RS16555at 647.400 kb on + strand, within HMPREF1058_RS16555at 647.400 kb on + strand, within HMPREF1058_RS16555at 647.401 kb on - strand, within HMPREF1058_RS16555at 647.555 kb on + strand, within HMPREF1058_RS16555at 647.584 kb on + strand, within HMPREF1058_RS16555at 647.584 kb on + strand, within HMPREF1058_RS16555at 647.584 kb on + strand, within HMPREF1058_RS16555at 647.584 kb on + strand, within HMPREF1058_RS16555at 647.585 kb on - strand, within HMPREF1058_RS16555at 647.585 kb on - strand, within HMPREF1058_RS16555at 647.596 kb on + strand, within HMPREF1058_RS16555at 647.596 kb on + strand, within HMPREF1058_RS16555at 647.596 kb on + strand, within HMPREF1058_RS16555at 647.597 kb on - strand, within HMPREF1058_RS16555at 647.661 kb on - strandat 647.671 kb on + strandat 647.693 kb on - strandat 647.696 kb on + strandat 647.697 kb on - strandat 647.745 kb on + strandat 647.751 kb on + strandat 647.787 kb on + strandat 647.788 kb on - strandat 647.817 kb on + strandat 647.817 kb on + strandat 647.845 kb on - strandat 648.004 kb on + strand, within HMPREF1058_RS16550at 648.006 kb on + strand, within HMPREF1058_RS16550at 648.011 kb on + strand, within HMPREF1058_RS16550at 648.012 kb on - strand, within HMPREF1058_RS16550at 648.028 kb on - strand, within HMPREF1058_RS16550at 648.045 kb on + strand, within HMPREF1058_RS16550at 648.116 kb on + strand, within HMPREF1058_RS16550at 648.116 kb on + strand, within HMPREF1058_RS16550at 648.126 kb on + strand, within HMPREF1058_RS16550at 648.126 kb on + strand, within HMPREF1058_RS16550at 648.127 kb on - strand, within HMPREF1058_RS16550at 648.274 kb on + strand, within HMPREF1058_RS16550at 648.274 kb on + strand, within HMPREF1058_RS16550at 648.298 kb on - strand, within HMPREF1058_RS16550at 648.317 kb on - strand, within HMPREF1058_RS16550at 648.317 kb on - strand, within HMPREF1058_RS16550at 648.325 kb on - strand, within HMPREF1058_RS16550at 648.327 kb on - strand, within HMPREF1058_RS16550at 648.443 kb on - strand, within HMPREF1058_RS16550at 648.451 kb on + strand, within HMPREF1058_RS16550at 648.452 kb on - strand, within HMPREF1058_RS16550at 648.503 kb on + strand, within HMPREF1058_RS16550at 648.503 kb on + strand, within HMPREF1058_RS16550at 648.504 kb on - strand, within HMPREF1058_RS16550at 648.507 kb on + strand, within HMPREF1058_RS16550at 648.547 kb on + strand, within HMPREF1058_RS16550at 648.548 kb on - strand, within HMPREF1058_RS16550at 648.548 kb on - strand, within HMPREF1058_RS16550at 648.561 kb on + strand, within HMPREF1058_RS16550at 648.563 kb on + strand, within HMPREF1058_RS16550at 648.572 kb on - strand, within HMPREF1058_RS16550at 648.593 kb on - strand, within HMPREF1058_RS16550at 648.596 kb on - strand, within HMPREF1058_RS16550at 648.596 kb on - strand, within HMPREF1058_RS16550at 648.645 kb on - strand, within HMPREF1058_RS16550

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
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646,263 - HMPREF1058_RS16560 0.15 -0.2
646,263 - HMPREF1058_RS16560 0.15 +0.3
646,267 + HMPREF1058_RS16560 0.16 -1.8
646,385 - HMPREF1058_RS16560 0.26 +0.4
646,385 - HMPREF1058_RS16560 0.26 +2.1
646,500 - HMPREF1058_RS16560 0.35 -0.8
646,503 + HMPREF1058_RS16560 0.36 -0.6
646,504 - HMPREF1058_RS16560 0.36 -0.6
646,504 - HMPREF1058_RS16560 0.36 +1.2
646,548 - HMPREF1058_RS16560 0.39 -0.3
646,619 + HMPREF1058_RS16560 0.45 +2.4
646,619 + HMPREF1058_RS16560 0.45 -0.5
646,643 + HMPREF1058_RS16560 0.48 -2.7
646,643 + HMPREF1058_RS16560 0.48 -1.2
646,644 - HMPREF1058_RS16560 0.48 +0.0
646,800 + HMPREF1058_RS16560 0.61 +0.9
646,842 - HMPREF1058_RS16560 0.64 -1.8
646,889 - HMPREF1058_RS16560 0.68 -0.2
646,889 - HMPREF1058_RS16560 0.68 -0.4
646,889 - HMPREF1058_RS16560 0.68 +1.4
646,900 + HMPREF1058_RS16560 0.69 +3.2
646,953 - HMPREF1058_RS16560 0.74 -1.1
646,976 - HMPREF1058_RS16560 0.76 +1.5
646,993 + HMPREF1058_RS16560 0.77 -0.4
647,024 + HMPREF1058_RS16560 0.80 +2.5
647,029 - HMPREF1058_RS16560 0.80 +0.4
647,031 - HMPREF1058_RS16560 0.81 -0.5
647,126 - HMPREF1058_RS16560 0.89 +0.5
647,148 + -2.2
647,311 - HMPREF1058_RS16555 0.13 +1.8
647,372 - HMPREF1058_RS16555 0.28 +1.0
647,381 + HMPREF1058_RS16555 0.31 +0.8
647,388 + HMPREF1058_RS16555 0.33 +3.3
647,389 - HMPREF1058_RS16555 0.33 -2.7
647,396 + HMPREF1058_RS16555 0.35 +0.8
647,397 - HMPREF1058_RS16555 0.35 +0.6
647,397 - HMPREF1058_RS16555 0.35 +0.6
647,397 - HMPREF1058_RS16555 0.35 -3.8
647,400 + HMPREF1058_RS16555 0.36 +0.1
647,400 + HMPREF1058_RS16555 0.36 -2.4
647,401 - HMPREF1058_RS16555 0.36 +0.3
647,555 + HMPREF1058_RS16555 0.75 +0.8
647,584 + HMPREF1058_RS16555 0.83 -0.3
647,584 + HMPREF1058_RS16555 0.83 +0.3
647,584 + HMPREF1058_RS16555 0.83 +2.7
647,584 + HMPREF1058_RS16555 0.83 +4.3
647,585 - HMPREF1058_RS16555 0.83 +0.1
647,585 - HMPREF1058_RS16555 0.83 -1.4
647,596 + HMPREF1058_RS16555 0.86 +1.2
647,596 + HMPREF1058_RS16555 0.86 +2.7
647,596 + HMPREF1058_RS16555 0.86 -2.0
647,597 - HMPREF1058_RS16555 0.86 -3.2
647,661 - +4.5
647,671 + +1.5
647,693 - +1.7
647,696 + +1.4
647,697 - +0.2
647,745 + +0.1
647,751 + -4.3
647,787 + +1.5
647,788 - +1.3
647,817 + -0.3
647,817 + +2.8
647,845 - -1.2
648,004 + HMPREF1058_RS16550 0.20 +0.9
648,006 + HMPREF1058_RS16550 0.20 -0.7
648,011 + HMPREF1058_RS16550 0.21 -1.5
648,012 - HMPREF1058_RS16550 0.21 +0.4
648,028 - HMPREF1058_RS16550 0.22 -1.8
648,045 + HMPREF1058_RS16550 0.24 -1.3
648,116 + HMPREF1058_RS16550 0.30 +3.1
648,116 + HMPREF1058_RS16550 0.30 +1.3
648,126 + HMPREF1058_RS16550 0.31 -3.3
648,126 + HMPREF1058_RS16550 0.31 +1.0
648,127 - HMPREF1058_RS16550 0.31 +0.6
648,274 + HMPREF1058_RS16550 0.43 -0.5
648,274 + HMPREF1058_RS16550 0.43 +1.7
648,298 - HMPREF1058_RS16550 0.45 +1.2
648,317 - HMPREF1058_RS16550 0.47 -2.1
648,317 - HMPREF1058_RS16550 0.47 +0.2
648,325 - HMPREF1058_RS16550 0.48 -2.5
648,327 - HMPREF1058_RS16550 0.48 -2.0
648,443 - HMPREF1058_RS16550 0.58 +2.0
648,451 + HMPREF1058_RS16550 0.58 +2.4
648,452 - HMPREF1058_RS16550 0.58 -2.5
648,503 + HMPREF1058_RS16550 0.63 +1.4
648,503 + HMPREF1058_RS16550 0.63 +0.6
648,504 - HMPREF1058_RS16550 0.63 +1.7
648,507 + HMPREF1058_RS16550 0.63 +0.3
648,547 + HMPREF1058_RS16550 0.66 +1.4
648,548 - HMPREF1058_RS16550 0.67 -0.5
648,548 - HMPREF1058_RS16550 0.67 +0.9
648,561 + HMPREF1058_RS16550 0.68 +3.3
648,563 + HMPREF1058_RS16550 0.68 +0.1
648,572 - HMPREF1058_RS16550 0.69 +1.5
648,593 - HMPREF1058_RS16550 0.70 -1.2
648,596 - HMPREF1058_RS16550 0.71 +0.1
648,596 - HMPREF1058_RS16550 0.71 -1.1
648,645 - HMPREF1058_RS16550 0.75 +1.1

Or see this region's nucleotide sequence