Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16215 and HMPREF1058_RS16210 are separated by 185 nucleotides HMPREF1058_RS16210 and HMPREF1058_RS16205 are separated by 3 nucleotides HMPREF1058_RS16205 and HMPREF1058_RS16200 are separated by 17 nucleotides HMPREF1058_RS16200 and HMPREF1058_RS16195 are separated by 282 nucleotides
HMPREF1058_RS16215: HMPREF1058_RS16215 - hypothetical protein, at 731,042 to 731,509
_RS16215
HMPREF1058_RS16210: HMPREF1058_RS16210 - hypothetical protein, at 731,695 to 732,264
_RS16210
HMPREF1058_RS16205: HMPREF1058_RS16205 - DUF3987 domain-containing protein, at 732,268 to 734,211
_RS16205
HMPREF1058_RS16200: HMPREF1058_RS16200 - DUF4248 domain-containing protein, at 734,229 to 734,453
_RS16200
HMPREF1058_RS16195: HMPREF1058_RS16195 - hypothetical protein, at 734,736 to 735,275
_RS16195
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 731.273 kb on + strand, within HMPREF1058_RS16215 at 731.285 kb on - strand, within HMPREF1058_RS16215 at 731.285 kb on - strand, within HMPREF1058_RS16215 at 731.287 kb on - strand, within HMPREF1058_RS16215 at 731.512 kb on - strand at 731.754 kb on + strand, within HMPREF1058_RS16210 at 731.755 kb on - strand at 731.755 kb on - strand, within HMPREF1058_RS16210 at 731.755 kb on - strand, within HMPREF1058_RS16210 at 731.783 kb on - strand, within HMPREF1058_RS16210 at 731.880 kb on - strand, within HMPREF1058_RS16210 at 731.912 kb on - strand, within HMPREF1058_RS16210 at 732.038 kb on + strand, within HMPREF1058_RS16210 at 732.170 kb on - strand, within HMPREF1058_RS16210 at 732.256 kb on - strand at 732.279 kb on + strand at 732.352 kb on + strand at 732.353 kb on - strand at 732.353 kb on - strand at 732.355 kb on - strand at 732.355 kb on - strand at 732.439 kb on + strand at 732.616 kb on + strand, within HMPREF1058_RS16205 at 732.774 kb on - strand, within HMPREF1058_RS16205 at 732.774 kb on - strand, within HMPREF1058_RS16205 at 733.016 kb on - strand, within HMPREF1058_RS16205 at 733.133 kb on + strand, within HMPREF1058_RS16205 at 733.133 kb on + strand, within HMPREF1058_RS16205 at 733.164 kb on - strand, within HMPREF1058_RS16205 at 733.273 kb on + strand, within HMPREF1058_RS16205 at 733.308 kb on + strand, within HMPREF1058_RS16205 at 733.408 kb on + strand, within HMPREF1058_RS16205 at 733.408 kb on + strand, within HMPREF1058_RS16205 at 733.411 kb on + strand, within HMPREF1058_RS16205 at 733.412 kb on - strand, within HMPREF1058_RS16205 at 733.413 kb on + strand, within HMPREF1058_RS16205 at 733.413 kb on + strand, within HMPREF1058_RS16205 at 733.414 kb on - strand, within HMPREF1058_RS16205 at 733.574 kb on + strand, within HMPREF1058_RS16205 at 733.665 kb on + strand, within HMPREF1058_RS16205 at 734.045 kb on + strand at 734.046 kb on - strand at 734.158 kb on - strand at 734.536 kb on + strand at 734.576 kb on + strand at 734.596 kb on + strand at 734.607 kb on - strand at 734.636 kb on - strand at 734.732 kb on + strand at 734.732 kb on + strand at 734.733 kb on - strand at 734.745 kb on + strand at 734.745 kb on + strand at 734.824 kb on + strand, within HMPREF1058_RS16195 at 734.824 kb on + strand, within HMPREF1058_RS16195 at 734.872 kb on + strand, within HMPREF1058_RS16195 at 734.874 kb on + strand, within HMPREF1058_RS16195 at 735.053 kb on - strand, within HMPREF1058_RS16195 at 735.053 kb on - strand, within HMPREF1058_RS16195
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 remove 731,273 + HMPREF1058_RS16215 0.49 -0.5 731,285 - HMPREF1058_RS16215 0.52 -1.9 731,285 - HMPREF1058_RS16215 0.52 -1.7 731,287 - HMPREF1058_RS16215 0.52 -1.2 731,512 - -1.2 731,754 + HMPREF1058_RS16210 0.10 -2.0 731,755 - -0.8 731,755 - HMPREF1058_RS16210 0.11 -1.8 731,755 - HMPREF1058_RS16210 0.11 -1.6 731,783 - HMPREF1058_RS16210 0.15 -2.6 731,880 - HMPREF1058_RS16210 0.32 -2.0 731,912 - HMPREF1058_RS16210 0.38 -0.2 732,038 + HMPREF1058_RS16210 0.60 -0.2 732,170 - HMPREF1058_RS16210 0.83 -2.6 732,256 - -1.8 732,279 + -0.7 732,352 + -0.8 732,353 - -2.0 732,353 - -2.4 732,355 - -2.7 732,355 - -4.6 732,439 + +1.4 732,616 + HMPREF1058_RS16205 0.18 +1.2 732,774 - HMPREF1058_RS16205 0.26 -4.0 732,774 - HMPREF1058_RS16205 0.26 -2.5 733,016 - HMPREF1058_RS16205 0.38 -1.6 733,133 + HMPREF1058_RS16205 0.44 -1.0 733,133 + HMPREF1058_RS16205 0.44 -2.8 733,164 - HMPREF1058_RS16205 0.46 -2.2 733,273 + HMPREF1058_RS16205 0.52 -1.0 733,308 + HMPREF1058_RS16205 0.53 +0.2 733,408 + HMPREF1058_RS16205 0.59 +1.1 733,408 + HMPREF1058_RS16205 0.59 +2.6 733,411 + HMPREF1058_RS16205 0.59 -1.2 733,412 - HMPREF1058_RS16205 0.59 -2.0 733,413 + HMPREF1058_RS16205 0.59 -0.0 733,413 + HMPREF1058_RS16205 0.59 +0.8 733,414 - HMPREF1058_RS16205 0.59 -1.8 733,574 + HMPREF1058_RS16205 0.67 +0.1 733,665 + HMPREF1058_RS16205 0.72 -2.9 734,045 + -2.9 734,046 - -2.4 734,158 - -3.6 734,536 + -1.8 734,576 + -1.6 734,596 + -1.2 734,607 - -3.2 734,636 - -1.8 734,732 + -0.4 734,732 + +0.5 734,733 - -3.2 734,745 + +0.8 734,745 + -2.2 734,824 + HMPREF1058_RS16195 0.16 +0.8 734,824 + HMPREF1058_RS16195 0.16 -1.6 734,872 + HMPREF1058_RS16195 0.25 -1.6 734,874 + HMPREF1058_RS16195 0.26 -3.6 735,053 - HMPREF1058_RS16195 0.59 -0.2 735,053 - HMPREF1058_RS16195 0.59 -1.7
Or see this region's nucleotide sequence