Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12165 and HMPREF1058_RS12160 overlap by 4 nucleotides HMPREF1058_RS12160 and HMPREF1058_RS21610 overlap by 11 nucleotides HMPREF1058_RS21610 and HMPREF1058_RS12155 are separated by 188 nucleotides
HMPREF1058_RS12165: HMPREF1058_RS12165 - radical SAM protein, at 185,762 to 186,832
_RS12165
HMPREF1058_RS12160: HMPREF1058_RS12160 - hypothetical protein, at 186,829 to 187,785
_RS12160
HMPREF1058_RS21610: HMPREF1058_RS21610 - hypothetical protein, at 187,775 to 187,936
_RS21610
HMPREF1058_RS12155: HMPREF1058_RS12155 - hypothetical protein, at 188,125 to 190,611
_RS12155
Position (kb) 186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 185.840 kb on + strand at 185.842 kb on + strand at 185.843 kb on - strand at 185.867 kb on - strand at 185.874 kb on + strand, within HMPREF1058_RS12165 at 185.878 kb on + strand, within HMPREF1058_RS12165 at 185.878 kb on + strand, within HMPREF1058_RS12165 at 185.879 kb on - strand, within HMPREF1058_RS12165 at 185.906 kb on - strand, within HMPREF1058_RS12165 at 185.906 kb on - strand, within HMPREF1058_RS12165 at 185.906 kb on - strand, within HMPREF1058_RS12165 at 185.968 kb on + strand, within HMPREF1058_RS12165 at 185.968 kb on + strand, within HMPREF1058_RS12165 at 185.983 kb on + strand, within HMPREF1058_RS12165 at 185.998 kb on - strand, within HMPREF1058_RS12165 at 186.019 kb on - strand, within HMPREF1058_RS12165 at 186.021 kb on - strand, within HMPREF1058_RS12165 at 186.023 kb on - strand, within HMPREF1058_RS12165 at 186.023 kb on - strand, within HMPREF1058_RS12165 at 186.024 kb on + strand, within HMPREF1058_RS12165 at 186.024 kb on + strand, within HMPREF1058_RS12165 at 186.072 kb on + strand, within HMPREF1058_RS12165 at 186.073 kb on - strand, within HMPREF1058_RS12165 at 186.104 kb on - strand, within HMPREF1058_RS12165 at 186.104 kb on - strand, within HMPREF1058_RS12165 at 186.216 kb on + strand, within HMPREF1058_RS12165 at 186.219 kb on + strand, within HMPREF1058_RS12165 at 186.219 kb on + strand, within HMPREF1058_RS12165 at 186.219 kb on + strand, within HMPREF1058_RS12165 at 186.227 kb on - strand, within HMPREF1058_RS12165 at 186.254 kb on + strand, within HMPREF1058_RS12165 at 186.319 kb on + strand, within HMPREF1058_RS12165 at 186.375 kb on + strand, within HMPREF1058_RS12165 at 186.438 kb on + strand, within HMPREF1058_RS12165 at 186.510 kb on + strand, within HMPREF1058_RS12165 at 186.523 kb on + strand, within HMPREF1058_RS12165 at 186.533 kb on - strand, within HMPREF1058_RS12165 at 186.569 kb on - strand, within HMPREF1058_RS12165 at 186.675 kb on - strand, within HMPREF1058_RS12165 at 186.706 kb on + strand, within HMPREF1058_RS12165 at 186.707 kb on - strand, within HMPREF1058_RS12165 at 186.743 kb on + strand at 186.744 kb on - strand at 186.752 kb on - strand at 186.779 kb on + strand at 186.780 kb on - strand at 186.781 kb on + strand at 186.803 kb on - strand at 186.803 kb on - strand at 186.803 kb on - strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.806 kb on + strand at 186.807 kb on - strand at 186.809 kb on - strand at 186.811 kb on - strand at 186.845 kb on + strand at 186.845 kb on + strand at 186.849 kb on - strand at 186.849 kb on - strand at 186.853 kb on + strand at 186.854 kb on - strand at 186.855 kb on + strand at 186.855 kb on + strand at 186.855 kb on + strand at 186.858 kb on - strand at 186.879 kb on + strand at 186.901 kb on - strand at 186.918 kb on + strand at 186.962 kb on + strand, within HMPREF1058_RS12160 at 186.966 kb on + strand, within HMPREF1058_RS12160 at 186.967 kb on - strand, within HMPREF1058_RS12160 at 186.967 kb on - strand, within HMPREF1058_RS12160 at 186.968 kb on + strand, within HMPREF1058_RS12160 at 186.970 kb on + strand, within HMPREF1058_RS12160 at 186.971 kb on - strand, within HMPREF1058_RS12160 at 186.971 kb on - strand, within HMPREF1058_RS12160 at 186.972 kb on + strand at 186.973 kb on - strand, within HMPREF1058_RS12160 at 186.991 kb on + strand, within HMPREF1058_RS12160 at 187.059 kb on + strand, within HMPREF1058_RS12160 at 187.060 kb on - strand, within HMPREF1058_RS12160 at 187.089 kb on + strand, within HMPREF1058_RS12160 at 187.092 kb on + strand, within HMPREF1058_RS12160 at 187.142 kb on - strand, within HMPREF1058_RS12160 at 187.250 kb on - strand, within HMPREF1058_RS12160 at 187.250 kb on - strand, within HMPREF1058_RS12160 at 187.250 kb on - strand, within HMPREF1058_RS12160 at 187.255 kb on + strand, within HMPREF1058_RS12160 at 187.255 kb on + strand, within HMPREF1058_RS12160 at 187.255 kb on + strand, within HMPREF1058_RS12160 at 187.256 kb on - strand, within HMPREF1058_RS12160 at 187.333 kb on + strand, within HMPREF1058_RS12160 at 187.333 kb on + strand, within HMPREF1058_RS12160 at 187.334 kb on - strand, within HMPREF1058_RS12160 at 187.336 kb on - strand, within HMPREF1058_RS12160 at 187.372 kb on - strand, within HMPREF1058_RS12160 at 187.389 kb on + strand, within HMPREF1058_RS12160 at 187.389 kb on + strand, within HMPREF1058_RS12160 at 187.414 kb on - strand, within HMPREF1058_RS12160 at 187.431 kb on + strand, within HMPREF1058_RS12160 at 187.433 kb on + strand, within HMPREF1058_RS12160 at 187.586 kb on + strand, within HMPREF1058_RS12160 at 187.630 kb on + strand, within HMPREF1058_RS12160 at 187.630 kb on + strand, within HMPREF1058_RS12160 at 187.631 kb on - strand, within HMPREF1058_RS12160 at 187.634 kb on + strand, within HMPREF1058_RS12160 at 187.634 kb on + strand, within HMPREF1058_RS12160 at 187.635 kb on - strand, within HMPREF1058_RS12160 at 187.635 kb on - strand, within HMPREF1058_RS12160 at 187.635 kb on - strand, within HMPREF1058_RS12160 at 187.636 kb on + strand, within HMPREF1058_RS12160 at 187.671 kb on + strand, within HMPREF1058_RS12160 at 187.692 kb on + strand at 187.763 kb on + strand at 187.769 kb on + strand at 187.769 kb on + strand at 187.770 kb on - strand at 187.770 kb on - strand at 187.770 kb on - strand at 187.917 kb on - strand, within HMPREF1058_RS21610 at 187.939 kb on + strand at 187.939 kb on + strand at 187.941 kb on + strand at 187.943 kb on + strand at 188.060 kb on + strand at 188.060 kb on + strand at 188.060 kb on + strand at 188.060 kb on + strand at 188.085 kb on - strand at 188.085 kb on - strand at 188.085 kb on - strand at 188.104 kb on - strand at 188.147 kb on - strand at 188.169 kb on - strand at 188.169 kb on - strand at 188.170 kb on + strand at 188.170 kb on + strand at 188.201 kb on - strand at 188.232 kb on + strand at 188.237 kb on - strand at 188.264 kb on - strand at 188.295 kb on + strand at 188.295 kb on + strand at 188.332 kb on + strand at 188.333 kb on - strand at 188.364 kb on + strand at 188.394 kb on + strand, within HMPREF1058_RS12155 at 188.398 kb on + strand, within HMPREF1058_RS12155 at 188.398 kb on + strand, within HMPREF1058_RS12155 at 188.398 kb on + strand, within HMPREF1058_RS12155 at 188.405 kb on + strand, within HMPREF1058_RS12155 at 188.448 kb on - strand, within HMPREF1058_RS12155 at 188.448 kb on - strand, within HMPREF1058_RS12155 at 188.453 kb on - strand, within HMPREF1058_RS12155 at 188.453 kb on - strand, within HMPREF1058_RS12155 at 188.525 kb on + strand, within HMPREF1058_RS12155 at 188.526 kb on - strand, within HMPREF1058_RS12155 at 188.570 kb on + strand, within HMPREF1058_RS12155 at 188.588 kb on + strand, within HMPREF1058_RS12155 at 188.588 kb on + strand, within HMPREF1058_RS12155 at 188.589 kb on - strand, within HMPREF1058_RS12155 at 188.589 kb on - strand, within HMPREF1058_RS12155 at 188.592 kb on + strand, within HMPREF1058_RS12155 at 188.615 kb on + strand, within HMPREF1058_RS12155 at 188.616 kb on - strand, within HMPREF1058_RS12155 at 188.697 kb on + strand, within HMPREF1058_RS12155
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 remove 185,840 + +0.9 185,842 + +0.7 185,843 - +1.8 185,867 - +0.3 185,874 + HMPREF1058_RS12165 0.10 +1.6 185,878 + HMPREF1058_RS12165 0.11 +1.8 185,878 + HMPREF1058_RS12165 0.11 -2.8 185,879 - HMPREF1058_RS12165 0.11 +0.7 185,906 - HMPREF1058_RS12165 0.13 +0.9 185,906 - HMPREF1058_RS12165 0.13 +0.4 185,906 - HMPREF1058_RS12165 0.13 -1.3 185,968 + HMPREF1058_RS12165 0.19 -2.7 185,968 + HMPREF1058_RS12165 0.19 +0.2 185,983 + HMPREF1058_RS12165 0.21 +1.6 185,998 - HMPREF1058_RS12165 0.22 +0.9 186,019 - HMPREF1058_RS12165 0.24 -0.3 186,021 - HMPREF1058_RS12165 0.24 +0.3 186,023 - HMPREF1058_RS12165 0.24 -2.0 186,023 - HMPREF1058_RS12165 0.24 +0.8 186,024 + HMPREF1058_RS12165 0.24 +0.4 186,024 + HMPREF1058_RS12165 0.24 +3.3 186,072 + HMPREF1058_RS12165 0.29 -3.1 186,073 - HMPREF1058_RS12165 0.29 +1.6 186,104 - HMPREF1058_RS12165 0.32 +2.4 186,104 - HMPREF1058_RS12165 0.32 +2.0 186,216 + HMPREF1058_RS12165 0.42 -4.4 186,219 + HMPREF1058_RS12165 0.43 -1.4 186,219 + HMPREF1058_RS12165 0.43 +0.7 186,219 + HMPREF1058_RS12165 0.43 +3.7 186,227 - HMPREF1058_RS12165 0.43 +1.8 186,254 + HMPREF1058_RS12165 0.46 +2.9 186,319 + HMPREF1058_RS12165 0.52 +1.0 186,375 + HMPREF1058_RS12165 0.57 +1.2 186,438 + HMPREF1058_RS12165 0.63 -1.1 186,510 + HMPREF1058_RS12165 0.70 -2.6 186,523 + HMPREF1058_RS12165 0.71 +1.0 186,533 - HMPREF1058_RS12165 0.72 +2.4 186,569 - HMPREF1058_RS12165 0.75 +2.3 186,675 - HMPREF1058_RS12165 0.85 +1.0 186,706 + HMPREF1058_RS12165 0.88 -1.1 186,707 - HMPREF1058_RS12165 0.88 +3.1 186,743 + +0.8 186,744 - +0.7 186,752 - -0.1 186,779 + +2.4 186,780 - -0.1 186,781 + +0.3 186,803 - -1.9 186,803 - -0.2 186,803 - -0.5 186,806 + +1.8 186,806 + +3.0 186,806 + +3.1 186,807 - -0.1 186,809 - -1.4 186,811 - -0.2 186,845 + +0.7 186,845 + -1.1 186,849 - +1.3 186,849 - -0.8 186,853 + -0.2 186,854 - +0.5 186,855 + -0.8 186,855 + +0.1 186,855 + +0.5 186,858 - -0.6 186,879 + -0.0 186,901 - +1.8 186,918 + +1.1 186,962 + HMPREF1058_RS12160 0.14 +1.1 186,966 + HMPREF1058_RS12160 0.14 -0.5 186,967 - HMPREF1058_RS12160 0.14 +1.8 186,967 - HMPREF1058_RS12160 0.14 -0.1 186,968 + HMPREF1058_RS12160 0.15 +0.8 186,970 + HMPREF1058_RS12160 0.15 +0.3 186,971 - HMPREF1058_RS12160 0.15 -0.3 186,971 - HMPREF1058_RS12160 0.15 +0.6 186,972 + +0.5 186,973 - HMPREF1058_RS12160 0.15 -0.4 186,991 + HMPREF1058_RS12160 0.17 +1.0 187,059 + HMPREF1058_RS12160 0.24 -1.2 187,060 - HMPREF1058_RS12160 0.24 -0.0 187,089 + HMPREF1058_RS12160 0.27 +0.6 187,092 + HMPREF1058_RS12160 0.27 -1.3 187,142 - HMPREF1058_RS12160 0.33 -0.4 187,250 - HMPREF1058_RS12160 0.44 -2.3 187,250 - HMPREF1058_RS12160 0.44 -1.9 187,250 - HMPREF1058_RS12160 0.44 -0.7 187,255 + HMPREF1058_RS12160 0.45 -0.2 187,255 + HMPREF1058_RS12160 0.45 -1.5 187,255 + HMPREF1058_RS12160 0.45 +1.6 187,256 - HMPREF1058_RS12160 0.45 -1.1 187,333 + HMPREF1058_RS12160 0.53 +1.3 187,333 + HMPREF1058_RS12160 0.53 +2.6 187,334 - HMPREF1058_RS12160 0.53 -0.5 187,336 - HMPREF1058_RS12160 0.53 -1.4 187,372 - HMPREF1058_RS12160 0.57 +2.7 187,389 + HMPREF1058_RS12160 0.59 -1.9 187,389 + HMPREF1058_RS12160 0.59 -1.0 187,414 - HMPREF1058_RS12160 0.61 +0.0 187,431 + HMPREF1058_RS12160 0.63 +1.0 187,433 + HMPREF1058_RS12160 0.63 +1.2 187,586 + HMPREF1058_RS12160 0.79 +1.8 187,630 + HMPREF1058_RS12160 0.84 +1.3 187,630 + HMPREF1058_RS12160 0.84 +0.8 187,631 - HMPREF1058_RS12160 0.84 -1.9 187,634 + HMPREF1058_RS12160 0.84 -1.9 187,634 + HMPREF1058_RS12160 0.84 +1.6 187,635 - HMPREF1058_RS12160 0.84 -1.1 187,635 - HMPREF1058_RS12160 0.84 -1.5 187,635 - HMPREF1058_RS12160 0.84 -1.4 187,636 + HMPREF1058_RS12160 0.84 -0.0 187,671 + HMPREF1058_RS12160 0.88 -0.5 187,692 + +0.8 187,763 + -1.5 187,769 + +0.8 187,769 + -0.1 187,770 - +0.7 187,770 - +0.9 187,770 - +1.0 187,917 - HMPREF1058_RS21610 0.88 -1.9 187,939 + -0.3 187,939 + -1.3 187,941 + +2.2 187,943 + +0.1 188,060 + +0.5 188,060 + +1.2 188,060 + -2.1 188,060 + +1.5 188,085 - -2.1 188,085 - -0.0 188,085 - -0.2 188,104 - -1.6 188,147 - -1.9 188,169 - -0.5 188,169 - -0.5 188,170 + -0.3 188,170 + +3.6 188,201 - -1.7 188,232 + +1.1 188,237 - +0.8 188,264 - -0.9 188,295 + +0.8 188,295 + +0.1 188,332 + +1.7 188,333 - +1.2 188,364 + +3.1 188,394 + HMPREF1058_RS12155 0.11 +0.5 188,398 + HMPREF1058_RS12155 0.11 -0.1 188,398 + HMPREF1058_RS12155 0.11 +0.7 188,398 + HMPREF1058_RS12155 0.11 -1.5 188,405 + HMPREF1058_RS12155 0.11 -0.2 188,448 - HMPREF1058_RS12155 0.13 -1.5 188,448 - HMPREF1058_RS12155 0.13 +3.3 188,453 - HMPREF1058_RS12155 0.13 +1.9 188,453 - HMPREF1058_RS12155 0.13 -0.9 188,525 + HMPREF1058_RS12155 0.16 +1.3 188,526 - HMPREF1058_RS12155 0.16 +0.2 188,570 + HMPREF1058_RS12155 0.18 -1.0 188,588 + HMPREF1058_RS12155 0.19 +2.8 188,588 + HMPREF1058_RS12155 0.19 +0.8 188,589 - HMPREF1058_RS12155 0.19 -1.9 188,589 - HMPREF1058_RS12155 0.19 -0.1 188,592 + HMPREF1058_RS12155 0.19 +1.0 188,615 + HMPREF1058_RS12155 0.20 +2.9 188,616 - HMPREF1058_RS12155 0.20 -1.3 188,697 + HMPREF1058_RS12155 0.23 +2.1
Or see this region's nucleotide sequence