Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11270 and HMPREF1058_RS11265 are separated by 185 nucleotides HMPREF1058_RS11265 and HMPREF1058_RS11260 are separated by 114 nucleotides
HMPREF1058_RS11270: HMPREF1058_RS11270 - acetyl-CoA hydrolase/transferase family protein, at 411,139 to 412,632
_RS11270
HMPREF1058_RS11265: HMPREF1058_RS11265 - glycoside hydrolase family 3 C-terminal domain-containing protein, at 412,818 to 415,412
_RS11265
HMPREF1058_RS11260: HMPREF1058_RS11260 - arylsulfatase, at 415,527 to 417,053
_RS11260
Position (kb) 412
413
414
415
416 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 411.879 kb on + strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.982 kb on + strand, within HMPREF1058_RS11270 at 411.983 kb on - strand, within HMPREF1058_RS11270 at 412.047 kb on + strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.091 kb on - strand, within HMPREF1058_RS11270 at 412.179 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.181 kb on + strand, within HMPREF1058_RS11270 at 412.182 kb on - strand, within HMPREF1058_RS11270 at 412.185 kb on + strand, within HMPREF1058_RS11270 at 412.186 kb on - strand, within HMPREF1058_RS11270 at 412.298 kb on - strand, within HMPREF1058_RS11270 at 412.299 kb on + strand, within HMPREF1058_RS11270 at 412.299 kb on + strand, within HMPREF1058_RS11270 at 412.360 kb on - strand, within HMPREF1058_RS11270 at 412.513 kb on + strand at 412.578 kb on + strand at 412.610 kb on + strand at 412.635 kb on + strand at 412.697 kb on - strand at 412.774 kb on + strand at 412.792 kb on + strand at 412.793 kb on - strand at 412.797 kb on - strand at 412.818 kb on - strand at 412.837 kb on - strand at 412.888 kb on - strand at 413.006 kb on + strand at 413.013 kb on + strand at 413.120 kb on + strand, within HMPREF1058_RS11265 at 413.120 kb on + strand, within HMPREF1058_RS11265 at 413.121 kb on - strand, within HMPREF1058_RS11265 at 413.121 kb on - strand, within HMPREF1058_RS11265 at 413.121 kb on - strand, within HMPREF1058_RS11265 at 413.271 kb on + strand, within HMPREF1058_RS11265 at 413.463 kb on + strand, within HMPREF1058_RS11265 at 413.463 kb on + strand, within HMPREF1058_RS11265 at 413.504 kb on - strand, within HMPREF1058_RS11265 at 413.512 kb on + strand, within HMPREF1058_RS11265 at 413.512 kb on + strand, within HMPREF1058_RS11265 at 413.524 kb on - strand, within HMPREF1058_RS11265 at 413.599 kb on - strand, within HMPREF1058_RS11265 at 413.921 kb on + strand, within HMPREF1058_RS11265 at 413.923 kb on + strand, within HMPREF1058_RS11265 at 413.924 kb on - strand, within HMPREF1058_RS11265 at 413.924 kb on - strand, within HMPREF1058_RS11265 at 414.046 kb on - strand, within HMPREF1058_RS11265 at 414.182 kb on + strand, within HMPREF1058_RS11265 at 414.182 kb on + strand, within HMPREF1058_RS11265 at 414.398 kb on + strand, within HMPREF1058_RS11265 at 414.410 kb on + strand, within HMPREF1058_RS11265 at 414.411 kb on - strand, within HMPREF1058_RS11265 at 414.418 kb on + strand, within HMPREF1058_RS11265 at 414.439 kb on + strand, within HMPREF1058_RS11265 at 414.481 kb on - strand, within HMPREF1058_RS11265 at 414.511 kb on - strand, within HMPREF1058_RS11265 at 414.535 kb on - strand, within HMPREF1058_RS11265 at 414.593 kb on + strand, within HMPREF1058_RS11265 at 414.628 kb on + strand, within HMPREF1058_RS11265 at 414.628 kb on + strand, within HMPREF1058_RS11265 at 414.628 kb on + strand, within HMPREF1058_RS11265 at 414.629 kb on - strand, within HMPREF1058_RS11265 at 414.629 kb on - strand, within HMPREF1058_RS11265 at 414.629 kb on - strand, within HMPREF1058_RS11265 at 414.629 kb on - strand, within HMPREF1058_RS11265 at 414.650 kb on - strand, within HMPREF1058_RS11265 at 414.751 kb on + strand, within HMPREF1058_RS11265 at 414.752 kb on - strand, within HMPREF1058_RS11265 at 414.882 kb on - strand, within HMPREF1058_RS11265 at 414.983 kb on + strand, within HMPREF1058_RS11265 at 414.983 kb on + strand, within HMPREF1058_RS11265 at 414.984 kb on - strand, within HMPREF1058_RS11265 at 414.999 kb on - strand, within HMPREF1058_RS11265 at 415.008 kb on + strand, within HMPREF1058_RS11265 at 415.054 kb on - strand, within HMPREF1058_RS11265 at 415.064 kb on + strand, within HMPREF1058_RS11265 at 415.165 kb on + strand at 415.165 kb on + strand at 415.176 kb on + strand at 415.237 kb on + strand at 415.351 kb on + strand at 415.384 kb on + strand at 415.390 kb on + strand at 415.390 kb on + strand at 415.391 kb on - strand at 415.495 kb on - strand at 415.524 kb on - strand at 415.524 kb on - strand at 415.526 kb on - strand at 415.571 kb on + strand at 415.649 kb on + strand at 415.841 kb on + strand, within HMPREF1058_RS11260 at 415.858 kb on + strand, within HMPREF1058_RS11260 at 415.911 kb on + strand, within HMPREF1058_RS11260 at 415.990 kb on + strand, within HMPREF1058_RS11260 at 416.146 kb on + strand, within HMPREF1058_RS11260 at 416.147 kb on - strand, within HMPREF1058_RS11260 at 416.150 kb on - strand, within HMPREF1058_RS11260 at 416.204 kb on + strand, within HMPREF1058_RS11260 at 416.204 kb on + strand, within HMPREF1058_RS11260 at 416.312 kb on + strand, within HMPREF1058_RS11260 at 416.312 kb on + strand, within HMPREF1058_RS11260 at 416.387 kb on + strand, within HMPREF1058_RS11260
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 remove 411,879 + HMPREF1058_RS11270 0.50 -3.5 411,880 - HMPREF1058_RS11270 0.50 -4.6 411,880 - HMPREF1058_RS11270 0.50 -1.0 411,982 + HMPREF1058_RS11270 0.56 -3.0 411,983 - HMPREF1058_RS11270 0.56 -2.0 412,047 + HMPREF1058_RS11270 0.61 -3.5 412,048 - HMPREF1058_RS11270 0.61 -2.5 412,048 - HMPREF1058_RS11270 0.61 -1.8 412,091 - HMPREF1058_RS11270 0.64 -2.8 412,179 + HMPREF1058_RS11270 0.70 -0.5 412,181 + HMPREF1058_RS11270 0.70 -3.8 412,181 + HMPREF1058_RS11270 0.70 -2.0 412,181 + HMPREF1058_RS11270 0.70 -2.3 412,181 + HMPREF1058_RS11270 0.70 -5.2 412,181 + HMPREF1058_RS11270 0.70 -2.8 412,182 - HMPREF1058_RS11270 0.70 -4.0 412,185 + HMPREF1058_RS11270 0.70 -4.2 412,186 - HMPREF1058_RS11270 0.70 -4.3 412,298 - HMPREF1058_RS11270 0.78 -4.7 412,299 + HMPREF1058_RS11270 0.78 -1.5 412,299 + HMPREF1058_RS11270 0.78 -4.4 412,360 - HMPREF1058_RS11270 0.82 -1.8 412,513 + -5.6 412,578 + -2.3 412,610 + -1.1 412,635 + +0.6 412,697 - +1.2 412,774 + +1.2 412,792 + +0.3 412,793 - +0.4 412,797 - +1.3 412,818 - +3.3 412,837 - +0.1 412,888 - +1.3 413,006 + -1.2 413,013 + -1.2 413,120 + HMPREF1058_RS11265 0.12 -0.3 413,120 + HMPREF1058_RS11265 0.12 +1.4 413,121 - HMPREF1058_RS11265 0.12 +3.6 413,121 - HMPREF1058_RS11265 0.12 -0.2 413,121 - HMPREF1058_RS11265 0.12 +1.7 413,271 + HMPREF1058_RS11265 0.17 -1.9 413,463 + HMPREF1058_RS11265 0.25 +3.4 413,463 + HMPREF1058_RS11265 0.25 -0.4 413,504 - HMPREF1058_RS11265 0.26 +0.1 413,512 + HMPREF1058_RS11265 0.27 +1.5 413,512 + HMPREF1058_RS11265 0.27 -0.2 413,524 - HMPREF1058_RS11265 0.27 -0.3 413,599 - HMPREF1058_RS11265 0.30 +2.8 413,921 + HMPREF1058_RS11265 0.43 -0.8 413,923 + HMPREF1058_RS11265 0.43 -1.9 413,924 - HMPREF1058_RS11265 0.43 +1.3 413,924 - HMPREF1058_RS11265 0.43 -0.8 414,046 - HMPREF1058_RS11265 0.47 -1.0 414,182 + HMPREF1058_RS11265 0.53 -1.3 414,182 + HMPREF1058_RS11265 0.53 +0.4 414,398 + HMPREF1058_RS11265 0.61 +0.0 414,410 + HMPREF1058_RS11265 0.61 +1.3 414,411 - HMPREF1058_RS11265 0.61 -0.5 414,418 + HMPREF1058_RS11265 0.62 -3.8 414,439 + HMPREF1058_RS11265 0.62 +1.1 414,481 - HMPREF1058_RS11265 0.64 +2.3 414,511 - HMPREF1058_RS11265 0.65 +1.8 414,535 - HMPREF1058_RS11265 0.66 +0.0 414,593 + HMPREF1058_RS11265 0.68 -0.1 414,628 + HMPREF1058_RS11265 0.70 -0.0 414,628 + HMPREF1058_RS11265 0.70 -0.1 414,628 + HMPREF1058_RS11265 0.70 +0.6 414,629 - HMPREF1058_RS11265 0.70 +0.7 414,629 - HMPREF1058_RS11265 0.70 +0.5 414,629 - HMPREF1058_RS11265 0.70 +1.1 414,629 - HMPREF1058_RS11265 0.70 -0.8 414,650 - HMPREF1058_RS11265 0.71 -0.7 414,751 + HMPREF1058_RS11265 0.74 -1.5 414,752 - HMPREF1058_RS11265 0.75 +0.6 414,882 - HMPREF1058_RS11265 0.80 +1.0 414,983 + HMPREF1058_RS11265 0.83 +0.3 414,983 + HMPREF1058_RS11265 0.83 -0.5 414,984 - HMPREF1058_RS11265 0.83 -0.2 414,999 - HMPREF1058_RS11265 0.84 -0.5 415,008 + HMPREF1058_RS11265 0.84 -0.1 415,054 - HMPREF1058_RS11265 0.86 +1.7 415,064 + HMPREF1058_RS11265 0.87 +2.3 415,165 + -1.0 415,165 + -0.3 415,176 + +0.4 415,237 + +1.2 415,351 + -0.4 415,384 + +1.0 415,390 + +0.3 415,390 + +0.5 415,391 - +0.5 415,495 - -0.0 415,524 - +0.8 415,524 - -0.8 415,526 - -1.0 415,571 + -1.2 415,649 + -0.1 415,841 + HMPREF1058_RS11260 0.21 -1.0 415,858 + HMPREF1058_RS11260 0.22 +0.2 415,911 + HMPREF1058_RS11260 0.25 +0.1 415,990 + HMPREF1058_RS11260 0.30 -0.3 416,146 + HMPREF1058_RS11260 0.41 +1.3 416,147 - HMPREF1058_RS11260 0.41 -1.8 416,150 - HMPREF1058_RS11260 0.41 -0.2 416,204 + HMPREF1058_RS11260 0.44 +0.1 416,204 + HMPREF1058_RS11260 0.44 -0.6 416,312 + HMPREF1058_RS11260 0.51 -0.3 416,312 + HMPREF1058_RS11260 0.51 -2.1 416,387 + HMPREF1058_RS11260 0.56 -1.6
Or see this region's nucleotide sequence