Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10740

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10745 and HMPREF1058_RS10740 are separated by 101 nucleotidesHMPREF1058_RS10740 and HMPREF1058_RS10735 are separated by 20 nucleotides HMPREF1058_RS10745: HMPREF1058_RS10745 - sulfatase, at 574,666 to 576,102 _RS10745 HMPREF1058_RS10740: HMPREF1058_RS10740 - RagB/SusD family nutrient uptake outer membrane protein, at 576,204 to 578,117 _RS10740 HMPREF1058_RS10735: HMPREF1058_RS10735 - TonB-dependent receptor, at 578,138 to 581,392 _RS10735 Position (kb) 576 577 578 579Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 575.241 kb on + strand, within HMPREF1058_RS10745at 575.274 kb on - strand, within HMPREF1058_RS10745at 575.274 kb on - strand, within HMPREF1058_RS10745at 575.297 kb on + strand, within HMPREF1058_RS10745at 575.347 kb on + strand, within HMPREF1058_RS10745at 575.348 kb on - strand, within HMPREF1058_RS10745at 575.348 kb on - strand, within HMPREF1058_RS10745at 575.457 kb on + strand, within HMPREF1058_RS10745at 575.458 kb on - strand, within HMPREF1058_RS10745at 575.458 kb on - strand, within HMPREF1058_RS10745at 575.462 kb on - strand, within HMPREF1058_RS10745at 575.462 kb on - strand, within HMPREF1058_RS10745at 575.462 kb on - strand, within HMPREF1058_RS10745at 575.464 kb on - strand, within HMPREF1058_RS10745at 575.529 kb on - strand, within HMPREF1058_RS10745at 575.529 kb on - strand, within HMPREF1058_RS10745at 575.573 kb on - strand, within HMPREF1058_RS10745at 575.585 kb on + strand, within HMPREF1058_RS10745at 575.586 kb on - strand, within HMPREF1058_RS10745at 575.594 kb on + strand, within HMPREF1058_RS10745at 575.607 kb on - strand, within HMPREF1058_RS10745at 575.672 kb on + strand, within HMPREF1058_RS10745at 575.673 kb on - strand, within HMPREF1058_RS10745at 575.673 kb on - strand, within HMPREF1058_RS10745at 575.677 kb on - strand, within HMPREF1058_RS10745at 575.680 kb on + strand, within HMPREF1058_RS10745at 575.680 kb on + strand, within HMPREF1058_RS10745at 575.681 kb on - strand, within HMPREF1058_RS10745at 575.684 kb on + strand, within HMPREF1058_RS10745at 575.684 kb on + strand, within HMPREF1058_RS10745at 575.684 kb on + strand, within HMPREF1058_RS10745at 575.685 kb on - strand, within HMPREF1058_RS10745at 575.685 kb on - strand, within HMPREF1058_RS10745at 575.827 kb on + strand, within HMPREF1058_RS10745at 575.828 kb on - strand, within HMPREF1058_RS10745at 575.838 kb on + strand, within HMPREF1058_RS10745at 575.980 kb on + strandat 575.981 kb on - strandat 576.048 kb on - strandat 576.106 kb on - strandat 576.118 kb on + strandat 576.148 kb on + strandat 576.148 kb on + strandat 576.175 kb on - strandat 576.205 kb on + strandat 576.217 kb on + strandat 576.272 kb on + strandat 576.306 kb on + strandat 576.306 kb on + strandat 576.307 kb on - strandat 576.307 kb on - strandat 576.314 kb on - strandat 576.331 kb on + strandat 576.353 kb on - strandat 576.365 kb on + strandat 576.410 kb on + strand, within HMPREF1058_RS10740at 576.411 kb on - strand, within HMPREF1058_RS10740at 576.411 kb on - strand, within HMPREF1058_RS10740at 576.445 kb on + strand, within HMPREF1058_RS10740at 576.448 kb on + strand, within HMPREF1058_RS10740at 576.449 kb on - strand, within HMPREF1058_RS10740at 576.449 kb on - strand, within HMPREF1058_RS10740at 576.511 kb on - strand, within HMPREF1058_RS10740at 576.526 kb on - strand, within HMPREF1058_RS10740at 576.539 kb on + strand, within HMPREF1058_RS10740at 576.585 kb on - strand, within HMPREF1058_RS10740at 576.591 kb on + strand, within HMPREF1058_RS10740at 576.648 kb on + strand, within HMPREF1058_RS10740at 576.649 kb on - strand, within HMPREF1058_RS10740at 576.649 kb on - strand, within HMPREF1058_RS10740at 576.728 kb on + strand, within HMPREF1058_RS10740at 576.729 kb on - strand, within HMPREF1058_RS10740at 576.730 kb on + strand, within HMPREF1058_RS10740at 576.755 kb on + strand, within HMPREF1058_RS10740at 576.755 kb on + strand, within HMPREF1058_RS10740at 576.757 kb on + strand, within HMPREF1058_RS10740at 576.758 kb on - strand, within HMPREF1058_RS10740at 576.772 kb on + strand, within HMPREF1058_RS10740at 576.808 kb on + strand, within HMPREF1058_RS10740at 576.837 kb on + strand, within HMPREF1058_RS10740at 576.838 kb on - strand, within HMPREF1058_RS10740at 576.867 kb on + strand, within HMPREF1058_RS10740at 576.879 kb on - strand, within HMPREF1058_RS10740at 576.892 kb on - strand, within HMPREF1058_RS10740at 576.922 kb on + strand, within HMPREF1058_RS10740at 576.993 kb on + strand, within HMPREF1058_RS10740at 576.994 kb on - strand, within HMPREF1058_RS10740at 577.069 kb on + strand, within HMPREF1058_RS10740at 577.070 kb on - strand, within HMPREF1058_RS10740at 577.074 kb on - strand, within HMPREF1058_RS10740at 577.074 kb on - strand, within HMPREF1058_RS10740at 577.119 kb on - strand, within HMPREF1058_RS10740at 577.119 kb on - strand, within HMPREF1058_RS10740at 577.162 kb on + strand, within HMPREF1058_RS10740at 577.162 kb on + strand, within HMPREF1058_RS10740at 577.162 kb on + strand, within HMPREF1058_RS10740at 577.162 kb on + strand, within HMPREF1058_RS10740at 577.163 kb on - strand, within HMPREF1058_RS10740at 577.163 kb on - strand, within HMPREF1058_RS10740at 577.163 kb on - strand, within HMPREF1058_RS10740at 577.163 kb on - strand, within HMPREF1058_RS10740at 577.163 kb on - strand, within HMPREF1058_RS10740at 577.165 kb on - strand, within HMPREF1058_RS10740at 577.165 kb on - strand, within HMPREF1058_RS10740at 577.165 kb on - strand, within HMPREF1058_RS10740at 577.169 kb on + strand, within HMPREF1058_RS10740at 577.170 kb on - strand, within HMPREF1058_RS10740at 577.175 kb on - strand, within HMPREF1058_RS10740at 577.185 kb on + strand, within HMPREF1058_RS10740at 577.186 kb on - strand, within HMPREF1058_RS10740at 577.215 kb on - strand, within HMPREF1058_RS10740at 577.216 kb on + strand, within HMPREF1058_RS10740at 577.217 kb on - strand, within HMPREF1058_RS10740at 577.217 kb on - strand, within HMPREF1058_RS10740at 577.220 kb on + strand, within HMPREF1058_RS10740at 577.230 kb on + strand, within HMPREF1058_RS10740at 577.271 kb on + strand, within HMPREF1058_RS10740at 577.272 kb on - strandat 577.359 kb on + strand, within HMPREF1058_RS10740at 577.367 kb on + strand, within HMPREF1058_RS10740at 577.371 kb on - strand, within HMPREF1058_RS10740at 577.438 kb on + strand, within HMPREF1058_RS10740at 577.438 kb on + strand, within HMPREF1058_RS10740at 577.439 kb on - strand, within HMPREF1058_RS10740at 577.602 kb on - strand, within HMPREF1058_RS10740at 577.687 kb on + strand, within HMPREF1058_RS10740at 577.732 kb on + strand, within HMPREF1058_RS10740at 577.789 kb on + strand, within HMPREF1058_RS10740at 577.833 kb on - strand, within HMPREF1058_RS10740at 577.956 kb on + strandat 577.979 kb on - strandat 577.979 kb on - strandat 578.042 kb on + strandat 578.086 kb on - strandat 578.088 kb on + strandat 578.097 kb on + strandat 578.097 kb on + strandat 578.097 kb on + strandat 578.098 kb on - strandat 578.165 kb on + strandat 578.166 kb on - strandat 578.166 kb on - strandat 578.276 kb on + strandat 578.333 kb on + strandat 578.353 kb on - strandat 578.382 kb on - strandat 578.603 kb on + strand, within HMPREF1058_RS10735at 578.685 kb on - strand, within HMPREF1058_RS10735at 578.710 kb on + strand, within HMPREF1058_RS10735at 578.774 kb on - strand, within HMPREF1058_RS10735at 578.774 kb on - strand, within HMPREF1058_RS10735at 578.783 kb on + strand, within HMPREF1058_RS10735at 578.990 kb on + strand, within HMPREF1058_RS10735at 579.014 kb on + strand, within HMPREF1058_RS10735at 579.015 kb on - strand, within HMPREF1058_RS10735at 579.047 kb on + strand, within HMPREF1058_RS10735at 579.048 kb on - strand, within HMPREF1058_RS10735at 579.104 kb on + strand, within HMPREF1058_RS10735

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
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575,241 + HMPREF1058_RS10745 0.40 -0.1
575,274 - HMPREF1058_RS10745 0.42 +1.5
575,274 - HMPREF1058_RS10745 0.42 -1.1
575,297 + HMPREF1058_RS10745 0.44 -0.5
575,347 + HMPREF1058_RS10745 0.47 -1.7
575,348 - HMPREF1058_RS10745 0.47 +0.5
575,348 - HMPREF1058_RS10745 0.47 +1.5
575,457 + HMPREF1058_RS10745 0.55 +0.7
575,458 - HMPREF1058_RS10745 0.55 +1.1
575,458 - HMPREF1058_RS10745 0.55 -0.9
575,462 - HMPREF1058_RS10745 0.55 -0.2
575,462 - HMPREF1058_RS10745 0.55 -2.5
575,462 - HMPREF1058_RS10745 0.55 +0.1
575,464 - HMPREF1058_RS10745 0.56 -0.6
575,529 - HMPREF1058_RS10745 0.60 +0.9
575,529 - HMPREF1058_RS10745 0.60 +0.9
575,573 - HMPREF1058_RS10745 0.63 +1.1
575,585 + HMPREF1058_RS10745 0.64 -0.5
575,586 - HMPREF1058_RS10745 0.64 +1.3
575,594 + HMPREF1058_RS10745 0.65 +2.3
575,607 - HMPREF1058_RS10745 0.65 +0.3
575,672 + HMPREF1058_RS10745 0.70 -2.0
575,673 - HMPREF1058_RS10745 0.70 +0.6
575,673 - HMPREF1058_RS10745 0.70 -0.6
575,677 - HMPREF1058_RS10745 0.70 +0.8
575,680 + HMPREF1058_RS10745 0.71 -2.5
575,680 + HMPREF1058_RS10745 0.71 +2.8
575,681 - HMPREF1058_RS10745 0.71 -1.1
575,684 + HMPREF1058_RS10745 0.71 +0.1
575,684 + HMPREF1058_RS10745 0.71 -2.4
575,684 + HMPREF1058_RS10745 0.71 +0.6
575,685 - HMPREF1058_RS10745 0.71 -1.1
575,685 - HMPREF1058_RS10745 0.71 +1.3
575,827 + HMPREF1058_RS10745 0.81 -1.3
575,828 - HMPREF1058_RS10745 0.81 +1.1
575,838 + HMPREF1058_RS10745 0.82 +1.0
575,980 + +0.4
575,981 - +0.1
576,048 - +0.7
576,106 - +1.3
576,118 + -0.2
576,148 + +0.5
576,148 + +0.4
576,175 - -0.6
576,205 + -2.1
576,217 + -1.7
576,272 + -0.2
576,306 + -0.3
576,306 + +1.8
576,307 - -1.3
576,307 - -1.4
576,314 - -1.3
576,331 + +2.6
576,353 - +0.5
576,365 + -0.5
576,410 + HMPREF1058_RS10740 0.11 -2.1
576,411 - HMPREF1058_RS10740 0.11 +0.7
576,411 - HMPREF1058_RS10740 0.11 +1.1
576,445 + HMPREF1058_RS10740 0.13 +1.9
576,448 + HMPREF1058_RS10740 0.13 -2.3
576,449 - HMPREF1058_RS10740 0.13 +0.4
576,449 - HMPREF1058_RS10740 0.13 +2.1
576,511 - HMPREF1058_RS10740 0.16 +2.1
576,526 - HMPREF1058_RS10740 0.17 -0.3
576,539 + HMPREF1058_RS10740 0.18 +1.4
576,585 - HMPREF1058_RS10740 0.20 +0.3
576,591 + HMPREF1058_RS10740 0.20 +1.1
576,648 + HMPREF1058_RS10740 0.23 -0.9
576,649 - HMPREF1058_RS10740 0.23 -2.4
576,649 - HMPREF1058_RS10740 0.23 +2.0
576,728 + HMPREF1058_RS10740 0.27 -0.8
576,729 - HMPREF1058_RS10740 0.27 +0.1
576,730 + HMPREF1058_RS10740 0.27 +0.9
576,755 + HMPREF1058_RS10740 0.29 -0.5
576,755 + HMPREF1058_RS10740 0.29 -0.2
576,757 + HMPREF1058_RS10740 0.29 -1.5
576,758 - HMPREF1058_RS10740 0.29 -0.3
576,772 + HMPREF1058_RS10740 0.30 +0.8
576,808 + HMPREF1058_RS10740 0.32 +0.4
576,837 + HMPREF1058_RS10740 0.33 +0.8
576,838 - HMPREF1058_RS10740 0.33 +2.4
576,867 + HMPREF1058_RS10740 0.35 -0.8
576,879 - HMPREF1058_RS10740 0.35 +1.1
576,892 - HMPREF1058_RS10740 0.36 -2.7
576,922 + HMPREF1058_RS10740 0.38 -0.4
576,993 + HMPREF1058_RS10740 0.41 -0.1
576,994 - HMPREF1058_RS10740 0.41 +0.6
577,069 + HMPREF1058_RS10740 0.45 +1.1
577,070 - HMPREF1058_RS10740 0.45 +2.7
577,074 - HMPREF1058_RS10740 0.45 +1.4
577,074 - HMPREF1058_RS10740 0.45 -1.1
577,119 - HMPREF1058_RS10740 0.48 +1.0
577,119 - HMPREF1058_RS10740 0.48 +0.1
577,162 + HMPREF1058_RS10740 0.50 +0.2
577,162 + HMPREF1058_RS10740 0.50 -0.7
577,162 + HMPREF1058_RS10740 0.50 -1.7
577,162 + HMPREF1058_RS10740 0.50 +0.5
577,163 - HMPREF1058_RS10740 0.50 -0.5
577,163 - HMPREF1058_RS10740 0.50 +0.1
577,163 - HMPREF1058_RS10740 0.50 +2.9
577,163 - HMPREF1058_RS10740 0.50 +0.2
577,163 - HMPREF1058_RS10740 0.50 -0.4
577,165 - HMPREF1058_RS10740 0.50 -1.5
577,165 - HMPREF1058_RS10740 0.50 -1.1
577,165 - HMPREF1058_RS10740 0.50 -0.6
577,169 + HMPREF1058_RS10740 0.50 +1.3
577,170 - HMPREF1058_RS10740 0.50 +0.7
577,175 - HMPREF1058_RS10740 0.51 +1.6
577,185 + HMPREF1058_RS10740 0.51 +1.0
577,186 - HMPREF1058_RS10740 0.51 +1.0
577,215 - HMPREF1058_RS10740 0.53 +0.0
577,216 + HMPREF1058_RS10740 0.53 -0.3
577,217 - HMPREF1058_RS10740 0.53 +1.1
577,217 - HMPREF1058_RS10740 0.53 -1.8
577,220 + HMPREF1058_RS10740 0.53 -1.4
577,230 + HMPREF1058_RS10740 0.54 -1.8
577,271 + HMPREF1058_RS10740 0.56 +0.7
577,272 - +4.0
577,359 + HMPREF1058_RS10740 0.60 +0.1
577,367 + HMPREF1058_RS10740 0.61 +1.5
577,371 - HMPREF1058_RS10740 0.61 +0.3
577,438 + HMPREF1058_RS10740 0.64 -1.2
577,438 + HMPREF1058_RS10740 0.64 +1.2
577,439 - HMPREF1058_RS10740 0.65 -1.1
577,602 - HMPREF1058_RS10740 0.73 +1.0
577,687 + HMPREF1058_RS10740 0.77 -2.5
577,732 + HMPREF1058_RS10740 0.80 -0.0
577,789 + HMPREF1058_RS10740 0.83 +0.1
577,833 - HMPREF1058_RS10740 0.85 -2.7
577,956 + +0.4
577,979 - +1.7
577,979 - +1.2
578,042 + +1.1
578,086 - +0.3
578,088 + +0.4
578,097 + -2.1
578,097 + +1.3
578,097 + +0.1
578,098 - -1.1
578,165 + +2.0
578,166 - -0.2
578,166 - -2.5
578,276 + +0.3
578,333 + +0.1
578,353 - -0.2
578,382 - -1.1
578,603 + HMPREF1058_RS10735 0.14 -0.5
578,685 - HMPREF1058_RS10735 0.17 -2.7
578,710 + HMPREF1058_RS10735 0.18 +1.7
578,774 - HMPREF1058_RS10735 0.20 -0.5
578,774 - HMPREF1058_RS10735 0.20 +0.8
578,783 + HMPREF1058_RS10735 0.20 +0.5
578,990 + HMPREF1058_RS10735 0.26 +0.8
579,014 + HMPREF1058_RS10735 0.27 -2.5
579,015 - HMPREF1058_RS10735 0.27 +3.1
579,047 + HMPREF1058_RS10735 0.28 -0.2
579,048 - HMPREF1058_RS10735 0.28 -0.5
579,104 + HMPREF1058_RS10735 0.30 -0.1

Or see this region's nucleotide sequence