Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10160 and HMPREF1058_RS10155 are separated by 29 nucleotides HMPREF1058_RS10155 and HMPREF1058_RS10145 are separated by 367 nucleotides HMPREF1058_RS10145 and HMPREF1058_RS10140 are separated by 119 nucleotides HMPREF1058_RS10140 and HMPREF1058_RS10135 overlap by 11 nucleotides HMPREF1058_RS10135 and HMPREF1058_RS10130 are separated by 2 nucleotides
HMPREF1058_RS10160: HMPREF1058_RS10160 - hypothetical protein, at 713,887 to 714,645
_RS10160
HMPREF1058_RS10155: HMPREF1058_RS10155 - hypothetical protein, at 714,675 to 715,103
_RS10155
HMPREF1058_RS10145: HMPREF1058_RS10145 - hypothetical protein, at 715,471 to 716,052
_RS10145
HMPREF1058_RS10140: HMPREF1058_RS10140 - hypothetical protein, at 716,172 to 716,624
_RS10140
HMPREF1058_RS10135: HMPREF1058_RS10135 - hypothetical protein, at 716,614 to 716,979
_RS10135
HMPREF1058_RS10130: HMPREF1058_RS10130 - MBL fold metallo-hydrolase, at 716,982 to 717,716
_RS10130
Position (kb) 715
716
717 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 714.572 kb on + strand at 714.572 kb on + strand at 714.740 kb on + strand, within HMPREF1058_RS10155 at 714.773 kb on + strand, within HMPREF1058_RS10155 at 714.804 kb on + strand, within HMPREF1058_RS10155 at 715.092 kb on + strand at 715.092 kb on + strand at 715.121 kb on + strand at 715.193 kb on + strand at 715.204 kb on + strand at 715.283 kb on + strand at 715.289 kb on + strand at 715.303 kb on + strand at 715.489 kb on + strand at 715.592 kb on + strand, within HMPREF1058_RS10145 at 715.659 kb on + strand, within HMPREF1058_RS10145 at 715.670 kb on + strand, within HMPREF1058_RS10145 at 715.670 kb on + strand, within HMPREF1058_RS10145 at 715.998 kb on + strand at 716.057 kb on + strand at 716.177 kb on + strand at 716.219 kb on + strand, within HMPREF1058_RS10140 at 716.348 kb on + strand, within HMPREF1058_RS10140 at 716.400 kb on + strand, within HMPREF1058_RS10140 at 716.465 kb on + strand, within HMPREF1058_RS10140 at 716.526 kb on + strand, within HMPREF1058_RS10140 at 716.626 kb on + strand at 716.632 kb on + strand at 716.732 kb on + strand, within HMPREF1058_RS10135 at 716.781 kb on + strand, within HMPREF1058_RS10135 at 716.784 kb on + strand, within HMPREF1058_RS10135 at 716.823 kb on + strand, within HMPREF1058_RS10135 at 716.831 kb on + strand, within HMPREF1058_RS10135 at 716.974 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 remove 714,572 + -0.0 714,572 + -0.5 714,740 + HMPREF1058_RS10155 0.15 +1.4 714,773 + HMPREF1058_RS10155 0.23 -0.5 714,804 + HMPREF1058_RS10155 0.30 +0.5 715,092 + +0.1 715,092 + +1.1 715,121 + -1.3 715,193 + -1.5 715,204 + -0.1 715,283 + +1.9 715,289 + -0.3 715,303 + +0.2 715,489 + -0.6 715,592 + HMPREF1058_RS10145 0.21 +0.6 715,659 + HMPREF1058_RS10145 0.32 +1.8 715,670 + HMPREF1058_RS10145 0.34 -0.7 715,670 + HMPREF1058_RS10145 0.34 -1.1 715,998 + -2.0 716,057 + +1.1 716,177 + +3.0 716,219 + HMPREF1058_RS10140 0.10 +0.9 716,348 + HMPREF1058_RS10140 0.39 +1.6 716,400 + HMPREF1058_RS10140 0.50 +1.4 716,465 + HMPREF1058_RS10140 0.65 +1.1 716,526 + HMPREF1058_RS10140 0.78 +1.7 716,626 + -0.4 716,632 + +0.5 716,732 + HMPREF1058_RS10135 0.32 +0.8 716,781 + HMPREF1058_RS10135 0.46 +2.3 716,784 + HMPREF1058_RS10135 0.46 +1.7 716,823 + HMPREF1058_RS10135 0.57 -0.6 716,831 + HMPREF1058_RS10135 0.59 +1.2 716,974 + +1.4
Or see this region's nucleotide sequence