Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02505

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02510 and HMPREF1058_RS02505 are separated by 27 nucleotidesHMPREF1058_RS02505 and HMPREF1058_RS02500 are separated by 79 nucleotides HMPREF1058_RS02510: HMPREF1058_RS02510 - DUF2027 domain-containing protein, at 166,739 to 167,827 _RS02510 HMPREF1058_RS02505: HMPREF1058_RS02505 - PaaI family thioesterase, at 167,855 to 168,265 _RS02505 HMPREF1058_RS02500: HMPREF1058_RS02500 - histidine decarboxylase, at 168,345 to 168,953 _RS02500 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 166.895 kb on - strand, within HMPREF1058_RS02510at 166.897 kb on + strand, within HMPREF1058_RS02510at 166.897 kb on + strand, within HMPREF1058_RS02510at 167.012 kb on + strand, within HMPREF1058_RS02510at 167.087 kb on - strand, within HMPREF1058_RS02510at 167.087 kb on - strand, within HMPREF1058_RS02510at 167.111 kb on + strand, within HMPREF1058_RS02510at 167.111 kb on + strand, within HMPREF1058_RS02510at 167.141 kb on + strand, within HMPREF1058_RS02510at 167.151 kb on - strand, within HMPREF1058_RS02510at 167.167 kb on + strand, within HMPREF1058_RS02510at 167.341 kb on - strand, within HMPREF1058_RS02510at 167.344 kb on + strand, within HMPREF1058_RS02510at 167.368 kb on + strand, within HMPREF1058_RS02510at 167.368 kb on + strand, within HMPREF1058_RS02510at 167.384 kb on - strand, within HMPREF1058_RS02510at 167.411 kb on + strand, within HMPREF1058_RS02510at 167.412 kb on - strand, within HMPREF1058_RS02510at 167.418 kb on + strand, within HMPREF1058_RS02510at 167.419 kb on - strand, within HMPREF1058_RS02510at 167.469 kb on + strand, within HMPREF1058_RS02510at 167.470 kb on - strand, within HMPREF1058_RS02510at 167.747 kb on + strandat 167.748 kb on - strandat 167.748 kb on - strandat 167.755 kb on + strandat 167.792 kb on + strandat 167.819 kb on - strandat 167.842 kb on + strandat 167.844 kb on + strandat 167.897 kb on - strand, within HMPREF1058_RS02505at 167.926 kb on - strand, within HMPREF1058_RS02505at 167.988 kb on + strand, within HMPREF1058_RS02505at 167.989 kb on - strand, within HMPREF1058_RS02505at 167.989 kb on - strand, within HMPREF1058_RS02505at 168.010 kb on + strand, within HMPREF1058_RS02505at 168.011 kb on - strand, within HMPREF1058_RS02505at 168.011 kb on - strand, within HMPREF1058_RS02505at 168.085 kb on + strand, within HMPREF1058_RS02505at 168.103 kb on + strand, within HMPREF1058_RS02505at 168.120 kb on - strandat 168.120 kb on - strand, within HMPREF1058_RS02505at 168.142 kb on + strand, within HMPREF1058_RS02505at 168.207 kb on + strand, within HMPREF1058_RS02505at 168.208 kb on - strand, within HMPREF1058_RS02505at 168.208 kb on - strand, within HMPREF1058_RS02505at 168.208 kb on - strand, within HMPREF1058_RS02505at 168.211 kb on + strand, within HMPREF1058_RS02505at 168.264 kb on - strandat 168.268 kb on + strandat 168.269 kb on - strandat 168.270 kb on + strandat 168.274 kb on - strandat 168.480 kb on - strand, within HMPREF1058_RS02500at 168.480 kb on - strand, within HMPREF1058_RS02500at 168.532 kb on + strand, within HMPREF1058_RS02500at 168.532 kb on + strand, within HMPREF1058_RS02500at 168.557 kb on + strand, within HMPREF1058_RS02500at 168.618 kb on - strand, within HMPREF1058_RS02500at 168.633 kb on + strand, within HMPREF1058_RS02500at 168.724 kb on + strand, within HMPREF1058_RS02500at 168.725 kb on - strand, within HMPREF1058_RS02500at 168.725 kb on - strand, within HMPREF1058_RS02500at 168.726 kb on + strand, within HMPREF1058_RS02500at 168.726 kb on + strand, within HMPREF1058_RS02500at 168.861 kb on + strand, within HMPREF1058_RS02500at 168.906 kb on + strandat 168.954 kb on - strandat 168.989 kb on + strandat 168.990 kb on - strandat 168.990 kb on - strandat 169.043 kb on + strandat 169.052 kb on + strandat 169.146 kb on + strandat 169.166 kb on + strandat 169.199 kb on + strandat 169.253 kb on - strandat 169.256 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7
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166,895 - HMPREF1058_RS02510 0.14 -2.5
166,897 + HMPREF1058_RS02510 0.15 -0.6
166,897 + HMPREF1058_RS02510 0.15 -1.3
167,012 + HMPREF1058_RS02510 0.25 -0.3
167,087 - HMPREF1058_RS02510 0.32 -0.4
167,087 - HMPREF1058_RS02510 0.32 -0.1
167,111 + HMPREF1058_RS02510 0.34 +1.0
167,111 + HMPREF1058_RS02510 0.34 +2.6
167,141 + HMPREF1058_RS02510 0.37 +1.3
167,151 - HMPREF1058_RS02510 0.38 -1.3
167,167 + HMPREF1058_RS02510 0.39 +1.0
167,341 - HMPREF1058_RS02510 0.55 +1.1
167,344 + HMPREF1058_RS02510 0.56 +0.6
167,368 + HMPREF1058_RS02510 0.58 +0.8
167,368 + HMPREF1058_RS02510 0.58 -0.1
167,384 - HMPREF1058_RS02510 0.59 -1.3
167,411 + HMPREF1058_RS02510 0.62 +1.8
167,412 - HMPREF1058_RS02510 0.62 +1.4
167,418 + HMPREF1058_RS02510 0.62 -0.1
167,419 - HMPREF1058_RS02510 0.62 -0.3
167,469 + HMPREF1058_RS02510 0.67 +0.2
167,470 - HMPREF1058_RS02510 0.67 -2.3
167,747 + -0.9
167,748 - -0.9
167,748 - -1.3
167,755 + +0.2
167,792 + -0.5
167,819 - -0.6
167,842 + +1.9
167,844 + +1.1
167,897 - HMPREF1058_RS02505 0.10 +0.7
167,926 - HMPREF1058_RS02505 0.17 +1.0
167,988 + HMPREF1058_RS02505 0.32 +2.2
167,989 - HMPREF1058_RS02505 0.33 +2.8
167,989 - HMPREF1058_RS02505 0.33 +0.9
168,010 + HMPREF1058_RS02505 0.38 +1.8
168,011 - HMPREF1058_RS02505 0.38 +1.2
168,011 - HMPREF1058_RS02505 0.38 +1.2
168,085 + HMPREF1058_RS02505 0.56 -0.6
168,103 + HMPREF1058_RS02505 0.60 -0.7
168,120 - -1.3
168,120 - HMPREF1058_RS02505 0.64 +0.0
168,142 + HMPREF1058_RS02505 0.70 -0.4
168,207 + HMPREF1058_RS02505 0.86 +2.0
168,208 - HMPREF1058_RS02505 0.86 -0.1
168,208 - HMPREF1058_RS02505 0.86 -1.5
168,208 - HMPREF1058_RS02505 0.86 +0.2
168,211 + HMPREF1058_RS02505 0.87 +0.2
168,264 - -0.9
168,268 + +0.5
168,269 - -0.3
168,270 + -0.4
168,274 - -0.3
168,480 - HMPREF1058_RS02500 0.22 +1.2
168,480 - HMPREF1058_RS02500 0.22 +0.9
168,532 + HMPREF1058_RS02500 0.31 +1.5
168,532 + HMPREF1058_RS02500 0.31 -0.3
168,557 + HMPREF1058_RS02500 0.35 -1.3
168,618 - HMPREF1058_RS02500 0.45 -2.4
168,633 + HMPREF1058_RS02500 0.47 +1.7
168,724 + HMPREF1058_RS02500 0.62 -1.5
168,725 - HMPREF1058_RS02500 0.62 +0.7
168,725 - HMPREF1058_RS02500 0.62 +0.1
168,726 + HMPREF1058_RS02500 0.63 +1.3
168,726 + HMPREF1058_RS02500 0.63 +1.3
168,861 + HMPREF1058_RS02500 0.85 -2.9
168,906 + -0.3
168,954 - +0.2
168,989 + -1.5
168,990 - -0.1
168,990 - -1.6
169,043 + -0.4
169,052 + -1.6
169,146 + -0.3
169,166 + +3.1
169,199 + -2.1
169,253 - +0.8
169,256 + +0.6

Or see this region's nucleotide sequence