Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18390 and HMPREF1058_RS18385 are separated by 10 nucleotides HMPREF1058_RS18385 and HMPREF1058_RS18380 are separated by 5 nucleotides
HMPREF1058_RS18390: HMPREF1058_RS18390 - right-handed parallel beta-helix repeat-containing protein, at 168,322 to 170,202
_RS18390
HMPREF1058_RS18385: HMPREF1058_RS18385 - alpha-xylosidase, at 170,213 to 172,459
_RS18385
HMPREF1058_RS18380: HMPREF1058_RS18380 - cobalamin-binding protein, at 172,465 to 174,267
_RS18380
Position (kb) 170
171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 169.265 kb on + strand, within HMPREF1058_RS18390 at 169.281 kb on - strand, within HMPREF1058_RS18390 at 169.315 kb on + strand, within HMPREF1058_RS18390 at 169.363 kb on + strand, within HMPREF1058_RS18390 at 169.364 kb on - strand, within HMPREF1058_RS18390 at 169.371 kb on - strand, within HMPREF1058_RS18390 at 169.443 kb on - strand, within HMPREF1058_RS18390 at 169.449 kb on - strand, within HMPREF1058_RS18390 at 169.517 kb on - strand, within HMPREF1058_RS18390 at 169.631 kb on - strand, within HMPREF1058_RS18390 at 169.632 kb on + strand, within HMPREF1058_RS18390 at 169.633 kb on - strand, within HMPREF1058_RS18390 at 169.633 kb on - strand, within HMPREF1058_RS18390 at 169.655 kb on + strand, within HMPREF1058_RS18390 at 169.655 kb on + strand at 169.655 kb on + strand, within HMPREF1058_RS18390 at 169.656 kb on - strand, within HMPREF1058_RS18390 at 169.722 kb on - strand, within HMPREF1058_RS18390 at 169.738 kb on + strand, within HMPREF1058_RS18390 at 169.742 kb on + strand, within HMPREF1058_RS18390 at 169.760 kb on + strand, within HMPREF1058_RS18390 at 169.794 kb on + strand, within HMPREF1058_RS18390 at 169.795 kb on - strand, within HMPREF1058_RS18390 at 169.862 kb on - strand, within HMPREF1058_RS18390 at 169.906 kb on + strand, within HMPREF1058_RS18390 at 169.906 kb on + strand, within HMPREF1058_RS18390 at 169.907 kb on - strand, within HMPREF1058_RS18390 at 169.961 kb on + strand, within HMPREF1058_RS18390 at 169.962 kb on - strand, within HMPREF1058_RS18390 at 169.999 kb on + strand, within HMPREF1058_RS18390 at 169.999 kb on + strand, within HMPREF1058_RS18390 at 170.006 kb on - strand, within HMPREF1058_RS18390 at 170.091 kb on + strand at 170.091 kb on + strand at 170.092 kb on - strand at 170.130 kb on + strand at 170.159 kb on + strand at 170.294 kb on + strand at 170.294 kb on + strand at 170.294 kb on + strand at 170.329 kb on + strand at 170.409 kb on - strand at 170.429 kb on + strand at 170.597 kb on - strand, within HMPREF1058_RS18385 at 170.605 kb on - strand, within HMPREF1058_RS18385 at 170.605 kb on - strand, within HMPREF1058_RS18385 at 170.859 kb on + strand, within HMPREF1058_RS18385 at 170.880 kb on + strand, within HMPREF1058_RS18385 at 170.921 kb on + strand, within HMPREF1058_RS18385 at 170.921 kb on + strand, within HMPREF1058_RS18385 at 170.921 kb on + strand, within HMPREF1058_RS18385 at 170.924 kb on - strand, within HMPREF1058_RS18385 at 170.970 kb on - strand, within HMPREF1058_RS18385 at 171.201 kb on + strand, within HMPREF1058_RS18385 at 171.428 kb on + strand, within HMPREF1058_RS18385 at 171.430 kb on + strand, within HMPREF1058_RS18385 at 171.430 kb on + strand, within HMPREF1058_RS18385 at 171.432 kb on + strand at 171.433 kb on - strand, within HMPREF1058_RS18385 at 171.433 kb on - strand, within HMPREF1058_RS18385 at 171.533 kb on + strand, within HMPREF1058_RS18385 at 171.656 kb on + strand, within HMPREF1058_RS18385 at 171.905 kb on - strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.923 kb on + strand, within HMPREF1058_RS18385 at 171.924 kb on - strand, within HMPREF1058_RS18385 at 171.924 kb on - strand, within HMPREF1058_RS18385 at 171.925 kb on + strand, within HMPREF1058_RS18385 at 172.048 kb on + strand, within HMPREF1058_RS18385 at 172.055 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.064 kb on - strand, within HMPREF1058_RS18385 at 172.064 kb on - strand, within HMPREF1058_RS18385 at 172.334 kb on + strand at 172.334 kb on + strand at 172.335 kb on - strand at 172.427 kb on + strand at 172.509 kb on + strand at 172.862 kb on + strand, within HMPREF1058_RS18380 at 172.982 kb on + strand, within HMPREF1058_RS18380 at 173.032 kb on + strand, within HMPREF1058_RS18380 at 173.033 kb on - strand, within HMPREF1058_RS18380
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 remove 169,265 + HMPREF1058_RS18390 0.50 -1.4 169,281 - HMPREF1058_RS18390 0.51 +2.6 169,315 + HMPREF1058_RS18390 0.53 +1.2 169,363 + HMPREF1058_RS18390 0.55 +1.2 169,364 - HMPREF1058_RS18390 0.55 -1.2 169,371 - HMPREF1058_RS18390 0.56 +4.0 169,443 - HMPREF1058_RS18390 0.60 -1.7 169,449 - HMPREF1058_RS18390 0.60 -0.2 169,517 - HMPREF1058_RS18390 0.64 -0.8 169,631 - HMPREF1058_RS18390 0.70 +1.0 169,632 + HMPREF1058_RS18390 0.70 -0.0 169,633 - HMPREF1058_RS18390 0.70 +0.6 169,633 - HMPREF1058_RS18390 0.70 +0.6 169,655 + HMPREF1058_RS18390 0.71 -2.0 169,655 + +0.2 169,655 + HMPREF1058_RS18390 0.71 -2.0 169,656 - HMPREF1058_RS18390 0.71 -1.4 169,722 - HMPREF1058_RS18390 0.74 -0.8 169,738 + HMPREF1058_RS18390 0.75 +1.0 169,742 + HMPREF1058_RS18390 0.75 +2.5 169,760 + HMPREF1058_RS18390 0.76 -0.8 169,794 + HMPREF1058_RS18390 0.78 +0.6 169,795 - HMPREF1058_RS18390 0.78 +0.8 169,862 - HMPREF1058_RS18390 0.82 +1.9 169,906 + HMPREF1058_RS18390 0.84 -1.4 169,906 + HMPREF1058_RS18390 0.84 -0.7 169,907 - HMPREF1058_RS18390 0.84 +1.4 169,961 + HMPREF1058_RS18390 0.87 -1.3 169,962 - HMPREF1058_RS18390 0.87 -0.5 169,999 + HMPREF1058_RS18390 0.89 +0.1 169,999 + HMPREF1058_RS18390 0.89 -2.8 170,006 - HMPREF1058_RS18390 0.90 +0.4 170,091 + +0.6 170,091 + -1.8 170,092 - -0.4 170,130 + +0.5 170,159 + +0.4 170,294 + +2.1 170,294 + +1.5 170,294 + +0.9 170,329 + -1.8 170,409 - +1.8 170,429 + +1.1 170,597 - HMPREF1058_RS18385 0.17 +1.4 170,605 - HMPREF1058_RS18385 0.17 +1.0 170,605 - HMPREF1058_RS18385 0.17 -0.8 170,859 + HMPREF1058_RS18385 0.29 +0.1 170,880 + HMPREF1058_RS18385 0.30 -1.7 170,921 + HMPREF1058_RS18385 0.32 +1.5 170,921 + HMPREF1058_RS18385 0.32 -2.7 170,921 + HMPREF1058_RS18385 0.32 -1.0 170,924 - HMPREF1058_RS18385 0.32 -0.4 170,970 - HMPREF1058_RS18385 0.34 +1.1 171,201 + HMPREF1058_RS18385 0.44 -0.2 171,428 + HMPREF1058_RS18385 0.54 +1.4 171,430 + HMPREF1058_RS18385 0.54 -0.1 171,430 + HMPREF1058_RS18385 0.54 +0.6 171,432 + -1.4 171,433 - HMPREF1058_RS18385 0.54 -0.8 171,433 - HMPREF1058_RS18385 0.54 -0.9 171,533 + HMPREF1058_RS18385 0.59 +0.2 171,656 + HMPREF1058_RS18385 0.64 -0.4 171,905 - HMPREF1058_RS18385 0.75 -2.2 171,921 + HMPREF1058_RS18385 0.76 -1.2 171,921 + HMPREF1058_RS18385 0.76 +0.2 171,921 + HMPREF1058_RS18385 0.76 -0.8 171,922 - HMPREF1058_RS18385 0.76 +0.4 171,922 - HMPREF1058_RS18385 0.76 -1.4 171,922 - HMPREF1058_RS18385 0.76 +1.0 171,923 + HMPREF1058_RS18385 0.76 -1.0 171,924 - HMPREF1058_RS18385 0.76 -0.9 171,924 - HMPREF1058_RS18385 0.76 +0.6 171,925 + HMPREF1058_RS18385 0.76 -0.7 172,048 + HMPREF1058_RS18385 0.82 -1.0 172,055 - HMPREF1058_RS18385 0.82 +0.1 172,057 - HMPREF1058_RS18385 0.82 +0.0 172,057 - HMPREF1058_RS18385 0.82 -1.7 172,057 - HMPREF1058_RS18385 0.82 +1.1 172,061 + HMPREF1058_RS18385 0.82 -0.9 172,061 + HMPREF1058_RS18385 0.82 -0.8 172,061 + HMPREF1058_RS18385 0.82 -1.7 172,061 + +3.3 172,061 + HMPREF1058_RS18385 0.82 -3.2 172,063 + HMPREF1058_RS18385 0.82 -2.4 172,063 + HMPREF1058_RS18385 0.82 -0.9 172,063 + HMPREF1058_RS18385 0.82 +1.4 172,064 - HMPREF1058_RS18385 0.82 +1.0 172,064 - HMPREF1058_RS18385 0.82 -0.2 172,334 + -1.1 172,334 + -3.1 172,335 - +5.4 172,427 + -1.4 172,509 + +1.7 172,862 + HMPREF1058_RS18380 0.22 +3.2 172,982 + HMPREF1058_RS18380 0.29 -0.5 173,032 + HMPREF1058_RS18380 0.31 -0.7 173,033 - HMPREF1058_RS18380 0.32 -0.2
Or see this region's nucleotide sequence