Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18055 and HMPREF1058_RS18050 are separated by 153 nucleotides HMPREF1058_RS18050 and HMPREF1058_RS18045 are separated by 23 nucleotides HMPREF1058_RS18045 and HMPREF1058_RS18040 are separated by 154 nucleotides
HMPREF1058_RS18055: HMPREF1058_RS18055 - TolC family protein, at 267,694 to 269,037
_RS18055
HMPREF1058_RS18050: HMPREF1058_RS18050 - DUF4492 domain-containing protein, at 269,191 to 269,409
_RS18050
HMPREF1058_RS18045: HMPREF1058_RS18045 - cytochrome ubiquinol oxidase subunit I, at 269,433 to 270,935
_RS18045
HMPREF1058_RS18040: HMPREF1058_RS18040 - cytochrome d ubiquinol oxidase subunit II, at 271,090 to 272,235
_RS18040
Position (kb) 269
270
271 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 268.439 kb on - strand, within HMPREF1058_RS18055 at 268.511 kb on + strand, within HMPREF1058_RS18055 at 268.515 kb on + strand, within HMPREF1058_RS18055 at 268.573 kb on + strand, within HMPREF1058_RS18055 at 268.574 kb on - strand, within HMPREF1058_RS18055 at 268.585 kb on + strand, within HMPREF1058_RS18055 at 268.724 kb on + strand, within HMPREF1058_RS18055 at 268.734 kb on + strand, within HMPREF1058_RS18055 at 268.734 kb on + strand, within HMPREF1058_RS18055 at 268.736 kb on + strand, within HMPREF1058_RS18055 at 268.736 kb on + strand, within HMPREF1058_RS18055 at 268.737 kb on - strand, within HMPREF1058_RS18055 at 268.747 kb on - strand, within HMPREF1058_RS18055 at 269.019 kb on - strand at 269.021 kb on - strand at 269.021 kb on - strand at 269.071 kb on - strand at 269.164 kb on + strand at 269.227 kb on + strand, within HMPREF1058_RS18050 at 269.291 kb on + strand, within HMPREF1058_RS18050 at 269.307 kb on + strand, within HMPREF1058_RS18050 at 269.372 kb on - strand, within HMPREF1058_RS18050 at 269.391 kb on - strand at 269.499 kb on + strand at 269.499 kb on + strand at 269.500 kb on - strand at 269.533 kb on + strand at 269.533 kb on + strand at 269.543 kb on - strand at 269.641 kb on + strand, within HMPREF1058_RS18045 at 269.641 kb on + strand, within HMPREF1058_RS18045 at 269.685 kb on - strand, within HMPREF1058_RS18045 at 269.693 kb on + strand, within HMPREF1058_RS18045 at 269.697 kb on + strand, within HMPREF1058_RS18045 at 269.698 kb on - strand, within HMPREF1058_RS18045 at 269.905 kb on - strand, within HMPREF1058_RS18045 at 270.013 kb on + strand, within HMPREF1058_RS18045 at 270.046 kb on + strand, within HMPREF1058_RS18045 at 270.176 kb on - strand, within HMPREF1058_RS18045 at 270.318 kb on + strand, within HMPREF1058_RS18045 at 270.322 kb on + strand, within HMPREF1058_RS18045 at 270.372 kb on - strand, within HMPREF1058_RS18045 at 270.528 kb on + strand, within HMPREF1058_RS18045 at 270.530 kb on + strand, within HMPREF1058_RS18045 at 270.530 kb on + strand, within HMPREF1058_RS18045 at 270.562 kb on + strand, within HMPREF1058_RS18045 at 270.629 kb on + strand, within HMPREF1058_RS18045 at 270.630 kb on - strand, within HMPREF1058_RS18045 at 270.630 kb on - strand, within HMPREF1058_RS18045 at 270.631 kb on + strand, within HMPREF1058_RS18045 at 270.631 kb on + strand, within HMPREF1058_RS18045 at 270.679 kb on + strand, within HMPREF1058_RS18045 at 270.780 kb on - strand, within HMPREF1058_RS18045 at 270.780 kb on - strand, within HMPREF1058_RS18045 at 270.833 kb on + strand at 270.884 kb on - strand at 270.884 kb on - strand at 270.927 kb on - strand at 270.976 kb on + strand at 270.990 kb on - strand at 270.999 kb on + strand at 271.000 kb on - strand at 271.081 kb on + strand at 271.082 kb on - strand at 271.098 kb on + strand at 271.100 kb on + strand at 271.127 kb on + strand at 271.127 kb on + strand at 271.318 kb on + strand, within HMPREF1058_RS18040 at 271.319 kb on - strand, within HMPREF1058_RS18040 at 271.434 kb on + strand, within HMPREF1058_RS18040 at 271.434 kb on + strand, within HMPREF1058_RS18040 at 271.439 kb on - strand, within HMPREF1058_RS18040 at 271.465 kb on - strand, within HMPREF1058_RS18040 at 271.470 kb on - strand, within HMPREF1058_RS18040 at 271.743 kb on + strand, within HMPREF1058_RS18040 at 271.744 kb on - strand, within HMPREF1058_RS18040 at 271.761 kb on - strand, within HMPREF1058_RS18040 at 271.832 kb on - strand, within HMPREF1058_RS18040 at 271.833 kb on + strand, within HMPREF1058_RS18040 at 271.844 kb on - strand, within HMPREF1058_RS18040
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 remove 268,439 - HMPREF1058_RS18055 0.55 +2.3 268,511 + HMPREF1058_RS18055 0.61 -0.9 268,515 + HMPREF1058_RS18055 0.61 -1.0 268,573 + HMPREF1058_RS18055 0.65 +2.0 268,574 - HMPREF1058_RS18055 0.65 +1.2 268,585 + HMPREF1058_RS18055 0.66 -1.3 268,724 + HMPREF1058_RS18055 0.77 +1.2 268,734 + HMPREF1058_RS18055 0.77 +1.0 268,734 + HMPREF1058_RS18055 0.77 +0.6 268,736 + HMPREF1058_RS18055 0.78 +0.5 268,736 + HMPREF1058_RS18055 0.78 +1.1 268,737 - HMPREF1058_RS18055 0.78 -1.1 268,747 - HMPREF1058_RS18055 0.78 +1.1 269,019 - +1.0 269,021 - -2.3 269,021 - +2.2 269,071 - +1.4 269,164 + +0.1 269,227 + HMPREF1058_RS18050 0.16 -3.2 269,291 + HMPREF1058_RS18050 0.46 +2.2 269,307 + HMPREF1058_RS18050 0.53 -0.6 269,372 - HMPREF1058_RS18050 0.83 -1.5 269,391 - -1.8 269,499 + +0.1 269,499 + -1.4 269,500 - -1.0 269,533 + -0.4 269,533 + -0.2 269,543 - -3.5 269,641 + HMPREF1058_RS18045 0.14 -3.0 269,641 + HMPREF1058_RS18045 0.14 +0.8 269,685 - HMPREF1058_RS18045 0.17 +1.0 269,693 + HMPREF1058_RS18045 0.17 +0.2 269,697 + HMPREF1058_RS18045 0.18 -1.0 269,698 - HMPREF1058_RS18045 0.18 -2.3 269,905 - HMPREF1058_RS18045 0.31 -0.6 270,013 + HMPREF1058_RS18045 0.39 -1.0 270,046 + HMPREF1058_RS18045 0.41 -2.3 270,176 - HMPREF1058_RS18045 0.49 -2.4 270,318 + HMPREF1058_RS18045 0.59 -2.7 270,322 + HMPREF1058_RS18045 0.59 -1.7 270,372 - HMPREF1058_RS18045 0.62 -1.8 270,528 + HMPREF1058_RS18045 0.73 -1.0 270,530 + HMPREF1058_RS18045 0.73 -0.4 270,530 + HMPREF1058_RS18045 0.73 -1.6 270,562 + HMPREF1058_RS18045 0.75 -3.0 270,629 + HMPREF1058_RS18045 0.80 -0.8 270,630 - HMPREF1058_RS18045 0.80 -0.2 270,630 - HMPREF1058_RS18045 0.80 -0.6 270,631 + HMPREF1058_RS18045 0.80 -1.6 270,631 + HMPREF1058_RS18045 0.80 -2.0 270,679 + HMPREF1058_RS18045 0.83 -1.2 270,780 - HMPREF1058_RS18045 0.90 +1.5 270,780 - HMPREF1058_RS18045 0.90 -1.8 270,833 + -4.1 270,884 - +0.1 270,884 - -0.4 270,927 - +0.3 270,976 + +1.2 270,990 - -3.5 270,999 + +0.4 271,000 - +3.0 271,081 + -3.3 271,082 - -1.4 271,098 + +1.4 271,100 + +0.0 271,127 + +2.7 271,127 + -2.3 271,318 + HMPREF1058_RS18040 0.20 -2.2 271,319 - HMPREF1058_RS18040 0.20 -1.6 271,434 + HMPREF1058_RS18040 0.30 -0.2 271,434 + HMPREF1058_RS18040 0.30 +1.4 271,439 - HMPREF1058_RS18040 0.30 -4.4 271,465 - HMPREF1058_RS18040 0.33 -0.6 271,470 - HMPREF1058_RS18040 0.33 -0.4 271,743 + HMPREF1058_RS18040 0.57 -1.0 271,744 - HMPREF1058_RS18040 0.57 -1.0 271,761 - HMPREF1058_RS18040 0.59 -1.7 271,832 - HMPREF1058_RS18040 0.65 -0.1 271,833 + HMPREF1058_RS18040 0.65 +1.9 271,844 - HMPREF1058_RS18040 0.66 -0.8
Or see this region's nucleotide sequence